FC921088

Overview
NameFC921088
Unique NameFC921088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length179
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO12_VIBVY (NAD-dependent malic enzyme 2 OS=Vibrio vulnificus (strain YJ016) GN=sfcA2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.955e-15
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 3
Query:    9 VLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            +L N P   ++VIV+TDGERILGLGD G  GMGIP+GKLALYTA GGI P   LPI
Sbjct:  132 ILNNAPNTHVKVIVITDGERILGLGDQGIGGMGIPIGKLALYTACGGISPEHTLPI 187          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ERWCT (NAD-dependent malic enzyme OS=Erwinia carotovora subsp. atroseptica GN=sfcA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKLALYTA GGI P+  LP+
Sbjct:  137 DMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_BDEBA (NAD-dependent malic enzyme OS=Bdellovibrio bacteriovorus GN=sfcA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            E+L+N  ++ ++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 EMLRNVTKQKVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO12_PHOPR (NAD-dependent malic enzyme 2 OS=Photobacterium profundum GN=sfcA2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3
Query:    3 LEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            +++L N   + +++IV+TDGERILGLGD G  GMGIP+GKLALYTA GGI P+  LPI
Sbjct:  133 VDILNNAARQDVKIIVITDGERILGLGDQGIGGMGIPIGKLALYTACGGINPANTLPI 190          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_VIBFM (NAD-dependent malic enzyme OS=Vibrio fischeri (strain MJ11) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.452e-15
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L N   ++++VIVVTDGERILGLGD G  GMGIP+GKLALYTA GGI P+  LPI
Sbjct:  134 DLLNNAANQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAHTLPI 190          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_VIBF1 (NAD-dependent malic enzyme OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.452e-15
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L N   ++++VIVVTDGERILGLGD G  GMGIP+GKLALYTA GGI P+  LPI
Sbjct:  134 DLLNNAANQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAHTLPI 190          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHEFN (NAD-dependent malic enzyme OS=Shewanella frigidimarina (strain NCIMB 400) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.452e-15
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N     ++VIVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+ CL +T
Sbjct:  134 DILNNSTRHKVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYCLAVT 191          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_IDILO (NAD-dependent malic enzyme OS=Idiomarina loihiensis GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.452e-15
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N  ++ ++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  134 DILRNATKQKVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 190          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ALISL (NAD-dependent malic enzyme OS=Aliivibrio salmonicida (strain LFI1238) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.452e-15
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L N   ++++VIVVTDGERILGLGD G  GMGIP+GKLALYTA GGI P+  LPI
Sbjct:  134 DLLNNAANQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAHTLPI 190          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHEWM (NAD-dependent malic enzyme OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N   + +++IVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT
Sbjct:  134 DILNNSTRQKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPIT 191          
The following BLAST results are available for this feature:
BLAST of FC921088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
MAO12_VIBVY4.955e-1567.86NAD-dependent malic enzyme 2 OS=Vibrio vulnificus ... [more]
MAO1_ERWCT6.471e-1564.91NAD-dependent malic enzyme OS=Erwinia carotovora s... [more]
MAO1_BDEBA6.471e-1564.91NAD-dependent malic enzyme OS=Bdellovibrio bacteri... [more]
MAO12_PHOPR6.471e-1562.07NAD-dependent malic enzyme 2 OS=Photobacterium pro... [more]
MAO1_VIBFM8.452e-1566.67NAD-dependent malic enzyme OS=Vibrio fischeri (str... [more]
MAO1_VIBF18.452e-1566.67NAD-dependent malic enzyme OS=Vibrio fischeri (str... [more]
MAO1_SHEFN8.452e-1562.07NAD-dependent malic enzyme OS=Shewanella frigidima... [more]
MAO1_IDILO8.452e-1563.16NAD-dependent malic enzyme OS=Idiomarina loihiensi... [more]
MAO1_ALISL8.452e-1566.67NAD-dependent malic enzyme OS=Aliivibrio salmonici... [more]
MAO1_SHEWM1.104e-1462.07NAD-dependent malic enzyme OS=Shewanella woodyi (s... [more]

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Properties
Property NameValue
Genbank descriptionC32101A01EF RVDevelopN Citrus clementina cDNA clone C32101A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921088 ID=FC921088; Name=FC921088; organism=Citrus clementina; type=EST; length=179bp
TTCTTGAGGTTTTGAAGAACTGGCCTGAAAGGAGTATTCAGGTTATTGTT
GTCACAGATGGTGAGCGCATTTTGGGACTTGGGGATCTTGGCTGTCAGGG
GATGGGAATTCCTGTTGGGAAATTGGCTTTGTACACAGCACTTGGAGGCA
TTCGTCCCTCAGCATGTTTGCCCATAACC
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