FC921088

Overview
NameFC921088
Unique NameFC921088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length179
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHESW (NAD-dependent malic enzyme OS=Shewanella sp. (strain W3-18-1) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N   + +++IVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT
Sbjct:  134 DILNNSTRQKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPIT 191
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHESR (NAD-dependent malic enzyme OS=Shewanella sp. (strain MR-7) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N   + +++IVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT
Sbjct:  134 DILNNSTRQKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPIT 191
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHESM (NAD-dependent malic enzyme OS=Shewanella sp. (strain MR-4) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N   + +++IVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT
Sbjct:  134 DILNNSTRQKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPIT 191
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHESA (NAD-dependent malic enzyme OS=Shewanella sp. (strain ANA-3) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N   + +++IVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT
Sbjct:  134 DILNNSTRQKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPIT 191
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHEPW (NAD-dependent malic enzyme OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N   + +++IVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT
Sbjct:  134 DILNNSTRQKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPIT 191
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHEPC (NAD-dependent malic enzyme OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N   + +++IVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT
Sbjct:  134 DILNNSTRQKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPIT 191
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHEPA (NAD-dependent malic enzyme OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N   + +++IVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT
Sbjct:  134 DILNNSTRQKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPIT 191
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHEON (NAD-dependent malic enzyme OS=Shewanella oneidensis GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N   + +++IVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT
Sbjct:  134 DILNNSTRQKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPIT 191
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHELP (NAD-dependent malic enzyme OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N   + +++IVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT
Sbjct:  134 DILNNSTRQKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPIT 191
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHEDO (NAD-dependent malic enzyme OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N     ++VIVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT
Sbjct:  134 DILNNSTRHKVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPIT 191
The following BLAST results are available for this feature:
BLAST of FC921088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
MAO1_SHESW1.104e-1462.07NAD-dependent malic enzyme OS=Shewanella sp. (stra... [more]
MAO1_SHESR1.104e-1462.07NAD-dependent malic enzyme OS=Shewanella sp. (stra... [more]
MAO1_SHESM1.104e-1462.07NAD-dependent malic enzyme OS=Shewanella sp. (stra... [more]
MAO1_SHESA1.104e-1462.07NAD-dependent malic enzyme OS=Shewanella sp. (stra... [more]
MAO1_SHEPW1.104e-1462.07NAD-dependent malic enzyme OS=Shewanella piezotole... [more]
MAO1_SHEPC1.104e-1462.07NAD-dependent malic enzyme OS=Shewanella putrefaci... [more]
MAO1_SHEPA1.104e-1462.07NAD-dependent malic enzyme OS=Shewanella pealeana ... [more]
MAO1_SHEON1.104e-1462.07NAD-dependent malic enzyme OS=Shewanella oneidensi... [more]
MAO1_SHELP1.104e-1462.07NAD-dependent malic enzyme OS=Shewanella loihica (... [more]
MAO1_SHEDO1.104e-1463.79NAD-dependent malic enzyme OS=Shewanella denitrifi... [more]

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Properties
Property NameValue
Genbank descriptionC32101A01EF RVDevelopN Citrus clementina cDNA clone C32101A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921088 ID=FC921088; Name=FC921088; organism=Citrus clementina; type=EST; length=179bp
TTCTTGAGGTTTTGAAGAACTGGCCTGAAAGGAGTATTCAGGTTATTGTT
GTCACAGATGGTGAGCGCATTTTGGGACTTGGGGATCTTGGCTGTCAGGG
GATGGGAATTCCTGTTGGGAAATTGGCTTTGTACACAGCACTTGGAGGCA
TTCGTCCCTCAGCATGTTTGCCCATAACC
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