FC921088

Overview
NameFC921088
Unique NameFC921088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length179
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHEB9 (NAD-dependent malic enzyme OS=Shewanella baltica (strain OS195) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N   + +++IVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT
Sbjct:  134 DILNNSTRQKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPIT 191          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHEB8 (NAD-dependent malic enzyme OS=Shewanella baltica (strain OS185) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N   + +++IVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT
Sbjct:  134 DILNNSTRQKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPIT 191          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHEB5 (NAD-dependent malic enzyme OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N   + +++IVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT
Sbjct:  134 DILNNSTRQKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPIT 191          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHEB2 (NAD-dependent malic enzyme OS=Shewanella baltica (strain OS223) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L N   + +++IVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT
Sbjct:  134 DILNNSTRQKVKIIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPIT 191          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO11_PHOPR (NAD-dependent malic enzyme 1 OS=Photobacterium profundum GN=sfcA1 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L N   ++++VIVVTDGERILGLGD G  GMGIP+GKLALYTA GGI P+  LP+
Sbjct:  134 DMLNNASRQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAYTLPV 190          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_YERPY (NAD-dependent malic enzyme OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_YERPS (NAD-dependent malic enzyme OS=Yersinia pseudotuberculosis GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_YERPP (NAD-dependent malic enzyme OS=Yersinia pestis (strain Pestoides F) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_YERPN (NAD-dependent malic enzyme OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_YERPE (NAD-dependent malic enzyme OS=Yersinia pestis GN=sfcA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
The following BLAST results are available for this feature:
BLAST of FC921088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
MAO1_SHEB91.104e-1462.07NAD-dependent malic enzyme OS=Shewanella baltica (... [more]
MAO1_SHEB81.104e-1462.07NAD-dependent malic enzyme OS=Shewanella baltica (... [more]
MAO1_SHEB51.104e-1462.07NAD-dependent malic enzyme OS=Shewanella baltica (... [more]
MAO1_SHEB21.104e-1462.07NAD-dependent malic enzyme OS=Shewanella baltica (... [more]
MAO11_PHOPR1.104e-1464.91NAD-dependent malic enzyme 1 OS=Photobacterium pro... [more]
MAO1_YERPY1.442e-1463.16NAD-dependent malic enzyme OS=Yersinia pseudotuber... [more]
MAO1_YERPS1.442e-1463.16NAD-dependent malic enzyme OS=Yersinia pseudotuber... [more]
MAO1_YERPP1.442e-1463.16NAD-dependent malic enzyme OS=Yersinia pestis (str... [more]
MAO1_YERPN1.442e-1463.16NAD-dependent malic enzyme OS=Yersinia pestis bv. ... [more]
MAO1_YERPE1.442e-1463.16NAD-dependent malic enzyme OS=Yersinia pestis GN=s... [more]

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Properties
Property NameValue
Genbank descriptionC32101A01EF RVDevelopN Citrus clementina cDNA clone C32101A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921088 ID=FC921088; Name=FC921088; organism=Citrus clementina; type=EST; length=179bp
TTCTTGAGGTTTTGAAGAACTGGCCTGAAAGGAGTATTCAGGTTATTGTT
GTCACAGATGGTGAGCGCATTTTGGGACTTGGGGATCTTGGCTGTCAGGG
GATGGGAATTCCTGTTGGGAAATTGGCTTTGTACACAGCACTTGGAGGCA
TTCGTCCCTCAGCATGTTTGCCCATAACC
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