FC921089

Overview
NameFC921089
Unique NameFC921089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: SRPG_SYNE7 (Cysteine synthase, plasmid OS=Synechococcus elongatus (strain PCC 7942) GN=srpG PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.180e-34
Identity = 77/124 (62.10%), Postives = 94/124 (75.81%), Query Frame = 2
Query:  278 DVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            D +Q IGKTP+V LN IVKG  A + AK+E   P  SVK RIG +MI DAEQ+GL+ PGK  L+EPTSGNTGI LAF+AA++G  L LTMP +MSLERR LL A+GA+LVLT+  KG  GAV++
Sbjct:   10 DNSQTIGKTPLVRLNRIVKGAPATVLAKIEGRNPAYSVKCRIGAAMIWDAEQRGLLGPGKE-LIEPTSGNTGIALAFVAAARGIPLTLTMPETMSLERRKLLAAYGAKLVLTEGVKGMTGAVRR 132          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK_STRP6 (Cysteine synthase OS=Streptococcus pyogenes serotype M6 GN=cysK PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32
Identity = 67/127 (52.76%), Postives = 97/127 (76.38%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            I + +T+L+G+TP++ LN ++    A++  KLE   P  SVKDRI  SMI  AE +GLI+PG  +++EPTSGNTGIGLA++ A+KGY++I+ MP +MSLERR +++A+GAELVLT  A+G +GA+ K
Sbjct:    4 IYKTITELVGQTPIIKLNRLIPNEAADVYVKLEAFNPGSSVKDRIALSMIEAAEAEGLISPG-DVIIEPTSGNTGIGLAWVGAAKGYRVIIVMPETMSLERRQIIQAYGAELVLTPGAEGMKGAIAK 129          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK_NEIMB (Cysteine synthase OS=Neisseria meningitidis serogroup B GN=cysK PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.866e-32
Identity = 69/129 (53.49%), Postives = 93/129 (72.09%), Query Frame = 2
Query:  263 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            + IA  +T+LIG TP+V LN + +G  A +A KLE   P  SVKDRI  +MI  AE+ G I    +++VE TSGNTG+GLA + A++GYKL +TMP SMS ER++LL+AFGAEL+LT +A+G  GA+ K
Sbjct:    1 MKIANSITELIGNTPLVKLNRLTEGLKAEVAVKLEFFNPGSSVKDRIAEAMIEGAEKAGKINKN-TVIVEATSGNTGVGLAMVCAARGYKLAITMPESMSKERKMLLRAFGAELILTPAAEGMAGAIAK 128          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK_BACSU (Cysteine synthase OS=Bacillus subtilis GN=cysK PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 71/129 (55.04%), Postives = 95/129 (73.64%), Query Frame = 2
Query:  263 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            + +A  +T+LIG TP+V LN +     A++  KLE M P  SVKDRIG +MI  AE++G +  G +I +EPTSGNTGIGLA +AA+KG K IL MP +MS+ERR LL+A+GAELVLT  A+G +GA++K
Sbjct:    2 VRVANSITELIGNTPIVKLNRLADENSADVYLKLEYMNPGSSVKDRIGLAMIEAAEKEGKLKAGNTI-IEPTSGNTGIGLAMVAAAKGLKAILVMPDTMSMERRNLLRAYGAELVLTPGAEGMKGAIKK 129          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK_STAES (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cysK PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31
Identity = 72/123 (58.54%), Postives = 90/123 (73.17%), Query Frame = 2
Query:  281 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            VTQ+IG TP+V L  +V    A+I  KLE   P  SVKDRI  +MI  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++  +GA++K
Sbjct:    9 VTQIIGNTPVVKLRNVVDDDAADIYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKK 130          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK_STAEQ (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=cysK PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31
Identity = 72/123 (58.54%), Postives = 90/123 (73.17%), Query Frame = 2
Query:  281 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            VTQ+IG TP+V L  +V    A+I  KLE   P  SVKDRI  +MI  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++  +GA++K
Sbjct:    9 VTQIIGNTPVVKLRNVVDDDAADIYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKK 130          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK_SALTY (Cysteine synthase A OS=Salmonella typhimurium GN=cysK PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31
Identity = 76/127 (59.84%), Postives = 93/127 (73.23%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            I ED +  IG TP+V LN I  G    I AK+E   P  SVK RIG +MI DAE++G++ PG   LVEPTSGNTGI LA++AA++GYKL LTMP +MS+ERR LLKA GA LVLT+ AKG +GA+QK
Sbjct:    4 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQK 126          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK_SALTI (Cysteine synthase A OS=Salmonella typhi GN=cysK PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31
Identity = 76/127 (59.84%), Postives = 93/127 (73.23%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            I ED +  IG TP+V LN I  G    I AK+E   P  SVK RIG +MI DAE++G++ PG   LVEPTSGNTGI LA++AA++GYKL LTMP +MS+ERR LLKA GA LVLT+ AKG +GA+QK
Sbjct:    4 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQK 126          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK_ECOLI (Cysteine synthase A OS=Escherichia coli (strain K12) GN=cysK PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31
Identity = 76/127 (59.84%), Postives = 93/127 (73.23%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            I ED +  IG TP+V LN I  G    I AK+E   P  SVK RIG +MI DAE++G++ PG   LVEPTSGNTGI LA++AA++GYKL LTMP +MS+ERR LLKA GA LVLT+ AKG +GA+QK
Sbjct:    4 IFEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQK 126          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK_ECO57 (Cysteine synthase A OS=Escherichia coli O157:H7 GN=cysK PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31
Identity = 76/127 (59.84%), Postives = 93/127 (73.23%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            I ED +  IG TP+V LN I  G    I AK+E   P  SVK RIG +MI DAE++G++ PG   LVEPTSGNTGI LA++AA++GYKL LTMP +MS+ERR LLKA GA LVLT+ AKG +GA+QK
Sbjct:    4 IFEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQK 126          
The following BLAST results are available for this feature:
BLAST of FC921089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
SRPG_SYNE76.180e-3462.10Cysteine synthase, plasmid OS=Synechococcus elonga... [more]
CYSK_STRP61.988e-3252.76Cysteine synthase OS=Streptococcus pyogenes seroty... [more]
CYSK_NEIMB9.866e-3253.49Cysteine synthase OS=Neisseria meningitidis serogr... [more]
CYSK_BACSU1.289e-3155.04Cysteine synthase OS=Bacillus subtilis GN=cysK PE=... [more]
CYSK_STAES2.198e-3158.54Cysteine synthase OS=Staphylococcus epidermidis (s... [more]
CYSK_STAEQ2.198e-3158.54Cysteine synthase OS=Staphylococcus epidermidis (s... [more]
CYSK_SALTY2.198e-3159.84Cysteine synthase A OS=Salmonella typhimurium GN=c... [more]
CYSK_SALTI2.198e-3159.84Cysteine synthase A OS=Salmonella typhi GN=cysK PE... [more]
CYSK_ECOLI2.198e-3159.84Cysteine synthase A OS=Escherichia coli (strain K1... [more]
CYSK_ECO572.198e-3159.84Cysteine synthase A OS=Escherichia coli O157:H7 GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32101A02EF RVDevelopN Citrus clementina cDNA clone C32101A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921089 ID=FC921089; Name=FC921089; organism=Citrus clementina; type=EST; length=651bp
GATCATCAGTTGGTCGTCAGACAGTTAGTCCCACAAAGTTCCAAAAACAA
TGGCCACTTCGTCTTCTCTGGTGTGCAGTCCGTTGACTGTTCCTCTCTGC
ATCTCCAAGAAATCATCATTGGCCACTCTGAAACTGGGCTACATTAGCCC
CATAACAGCAGCTCGAAGATTGAAGCAGAATTTGTACAAGGTCTCTTACA
AACCCTGCAACTCTGTTGTGTGCAAGGCTGTCTCTGTGAAGCCGCAGACT
GGGATTGAAGGTCTCAACATTGCTGAAGATGTCACTCAGCTTATTGGGAA
GACGCCAATGGTATACCTGAATACTATTGTCAAGGGGTGTGTTGCAAACA
TTGCTGCCAAGCTTGAAATCATGGAACCATGTTGTAGTGTTAAGGACAGG
ATTGGTTTCAGTATGATAGCTGATGCCGAGCAAAAAGGACTAATAACGCC
TGGAAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACTGGAATTGGCC
TTGCTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTTGACTATGCCA
GCCTCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCATTTGGAGCTGA
GCTTGTATTAACTGATTCAGCAAAAGGCATNGAAGGGGCTGTGCAGAAAG
C
back to top