FC921089

Overview
NameFC921089
Unique NameFC921089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAI (Cysteine synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=cysK PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.602e-24
Identity = 64/127 (50.39%), Postives = 83/127 (65.35%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            I +D +  IG TP+V LN I  G   NI  K+E   P  SVK RIG +MI  AE+   I      L+E TSGNTGI LA++AAS+ Y+L LTMP +MS+ER+ +LK+ GAEL+LTD   G +GA+ K
Sbjct:    4 IYQDNSLTIGNTPLVRLNRIGNG---NILVKIESRNPSFSVKCRIGANMIWHAEKNNNINKNVK-LIEATSGNTGIALAYVAASRNYRLTLTMPETMSIERKKILKSLGAELILTDGRYGMKGAISK 126          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CBS_YEAST (Cystathionine beta-synthase OS=Saccharomyces cerevisiae GN=CYS4 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.797e-24
Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 2
Query:  278 DVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSA 622
            +V  L+G TP++ L  + K  G    I AKLE+  P  S+KDRI  SM+ +AE  G I P +S L+EPTSGNTGIGLA I A KGY+ I+T+P  MS E+  +LKA GAE++ T +A
Sbjct:   13 NVIDLVGNTPLIALKKLPKALGIKPQIYAKLELYNPGGSIKDRIAKSMVEEAEASGRIHPSRSTLIEPTSGNTGIGLALIGAIKGYRTIITLPEKMSNEKVSVLKALGAEIIRTPTA 129          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSM_SALTY (Cysteine synthase B OS=Salmonella typhimurium GN=cysM PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.292e-23
Identity = 61/118 (51.69%), Postives = 77/118 (65.25%), Query Frame = 2
Query:  287 QLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGA 640
            Q IG TP+V L  +     + I  KLE   P  SVKDR   SMI +AE++G I PG  +L+E TSGNTGI LA IAA KGY++ L MP +MS ERR  ++A+GAEL+L    +G EGA
Sbjct:    6 QTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 122          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSM_ECOLI (Cysteine synthase B OS=Escherichia coli (strain K12) GN=cysM PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.877e-23
Identity = 60/118 (50.85%), Postives = 77/118 (65.25%), Query Frame = 2
Query:  287 QLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGA 640
            Q IG TP+V L  +     + +  KLE   P  SVKDR   SMI +AE++G I PG  +L+E TSGNTGI LA IAA KGY++ L MP +MS ERR  ++A+GAEL+L    +G EGA
Sbjct:    6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 122          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CBS_RABIT (Cystathionine beta-synthase OS=Oryctolagus cuniculus GN=CBS PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 6.410e-23
Identity = 62/117 (52.99%), Postives = 75/117 (64.10%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 613
            I  D+ Q IG TPMV +N I K  G    + AK E      SVKDRI   MI DAE+ G + PG +I +EPTSGNTGIGLA  AA KGY+ I+ MP  MSLE+  +L+A GAE+V T
Sbjct:   76 ILPDILQKIGDTPMVRINKIGKNFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLRPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSLEKVDVLRALGAEIVRT 191          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CBS_RAT (Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 1.865e-22
Identity = 60/117 (51.28%), Postives = 75/117 (64.10%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 613
            I  D+ + IG TPMV +N I K  G    + AK E      SVKDRI   MI DAE+ G + PG +I +EPTSGNTGIGLA  AA KGY+ I+ MP  MS+E+  +L+A GAE+V T
Sbjct:   73 ILPDILRKIGNTPMVRINRISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRT 188          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CBS_MOUSE (Cystathionine beta-synthase OS=Mus musculus GN=Cbs PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 3.181e-22
Identity = 60/117 (51.28%), Postives = 75/117 (64.10%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 613
            I  D+ + IG TPMV +N I K  G    + AK E      SVKDRI   MI DAE+ G + PG +I +EPTSGNTGIGLA  AA KGY+ I+ MP  MS+E+  +L+A GAE+V T
Sbjct:   73 ILPDILRKIGNTPMVRINKISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGNLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRT 188          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CBS_DICDI (Cystathionine beta-synthase OS=Dictyostelium discoideum GN=cysB PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.181e-22
Identity = 57/115 (49.57%), Postives = 74/115 (64.35%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 613
            I +++   IG TP+V +N +       + AK E      SVKDRIG  MI DAE+ G I  G + L+EPTSGNTGIGLA  AA KGYK+I+T+P  MS E+  +LKA GAE++ T
Sbjct:   32 IMDNILDNIGGTPLVRVNKVSSDLECELVAKCEFFNAGGSVKDRIGHRMIVDAEESGRIKKGDT-LIEPTSGNTGIGLALTAAIKGYKMIITLPEKMSQEKVDVLKALGAEIIRT 145          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CBS_HUMAN (Cystathionine beta-synthase OS=Homo sapiens GN=CBS PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.062e-21
Identity = 59/117 (50.43%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 613
            I  D+ + IG TPMV +N I K  G    + AK E      SVKDRI   MI DAE+ G + PG +I +EPTSGNTGIGLA  AA +GY+ I+ MP  MS E+  +L+A GAE+V T
Sbjct:   76 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRT 191          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CBS_MACFA (Cystathionine beta-synthase OS=Macaca fascicularis GN=CBS PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 2.693e-21
Identity = 58/117 (49.57%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 613
            I  D+ + IG TPM+ +N I K  G    + AK E      SVKDRI   MI DAE+ G + PG +I +EPTSGNTGIGLA  AA +GY+ I+ MP  MS E+  +L+A GAE+V T
Sbjct:   76 ILPDILKKIGDTPMIRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALTAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRT 191          
The following BLAST results are available for this feature:
BLAST of FC921089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CYSK_BUCAI2.602e-2450.39Cysteine synthase OS=Buchnera aphidicola subsp. Ac... [more]
CBS_YEAST5.797e-2450.43Cystathionine beta-synthase OS=Saccharomyces cerev... [more]
CYSM_SALTY1.292e-2351.69Cysteine synthase B OS=Salmonella typhimurium GN=c... [more]
CYSM_ECOLI2.877e-2350.85Cysteine synthase B OS=Escherichia coli (strain K1... [more]
CBS_RABIT6.410e-2352.99Cystathionine beta-synthase OS=Oryctolagus cunicul... [more]
CBS_RAT1.865e-2251.28Cystathionine beta-synthase OS=Rattus norvegicus G... [more]
CBS_MOUSE3.181e-2251.28Cystathionine beta-synthase OS=Mus musculus GN=Cbs... [more]
CBS_DICDI3.181e-2249.57Cystathionine beta-synthase OS=Dictyostelium disco... [more]
CBS_HUMAN2.062e-2150.43Cystathionine beta-synthase OS=Homo sapiens GN=CBS... [more]
CBS_MACFA2.693e-2149.57Cystathionine beta-synthase OS=Macaca fascicularis... [more]

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Properties
Property NameValue
Genbank descriptionC32101A02EF RVDevelopN Citrus clementina cDNA clone C32101A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921089 ID=FC921089; Name=FC921089; organism=Citrus clementina; type=EST; length=651bp
GATCATCAGTTGGTCGTCAGACAGTTAGTCCCACAAAGTTCCAAAAACAA
TGGCCACTTCGTCTTCTCTGGTGTGCAGTCCGTTGACTGTTCCTCTCTGC
ATCTCCAAGAAATCATCATTGGCCACTCTGAAACTGGGCTACATTAGCCC
CATAACAGCAGCTCGAAGATTGAAGCAGAATTTGTACAAGGTCTCTTACA
AACCCTGCAACTCTGTTGTGTGCAAGGCTGTCTCTGTGAAGCCGCAGACT
GGGATTGAAGGTCTCAACATTGCTGAAGATGTCACTCAGCTTATTGGGAA
GACGCCAATGGTATACCTGAATACTATTGTCAAGGGGTGTGTTGCAAACA
TTGCTGCCAAGCTTGAAATCATGGAACCATGTTGTAGTGTTAAGGACAGG
ATTGGTTTCAGTATGATAGCTGATGCCGAGCAAAAAGGACTAATAACGCC
TGGAAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACTGGAATTGGCC
TTGCTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTTGACTATGCCA
GCCTCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCATTTGGAGCTGA
GCTTGTATTAACTGATTCAGCAAAAGGCATNGAAGGGGCTGTGCAGAAAG
C
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