FC921089

Overview
NameFC921089
Unique NameFC921089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSM_CAMJE (Cysteine synthase B OS=Campylobacter jejuni GN=cysM PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.517e-21
Identity = 61/129 (47.29%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  263 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            + + E V++LIG TP+++L    K    N+ AK E + P  S+KDR  F MI DA     I    +I VE TSGNTGI LA I A  G K I  MP SMSLERR ++  FGA L LT +  G +GAV K
Sbjct:    1 MKVHEKVSELIGNTPIIHL----KKFGINVFAKCEFLNPSHSIKDRAAFEMIKDALDSKKINQDTTI-VEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMITLFGARLELTPANLGMKGAVDK 124          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSM_PSEAE (Cysteine synthase B OS=Pseudomonas aeruginosa GN=cysM PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.023e-20
Identity = 56/120 (46.67%), Postives = 72/120 (60.00%), Query Frame = 2
Query:  281 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGA 640
            +   +G TP+V L  +       +  KLE   P  SVKDR   SMI  AE +G I PG + L+E TSGNTGI LA  AA KGYK+IL MP + + ER+  + A+GAEL+L    +G EGA
Sbjct:    8 IADCVGNTPLVRLQRLPGETSNTLLVKLEGNNPAGSVKDRPALSMITRAELRGDIRPGDT-LIEATSGNTGIALAMAAAIKGYKMILIMPDNSTAERKAAMTAYGAELILVSKEEGMEGA 126          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSM_AQUAE (Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.023e-20
Identity = 59/130 (45.38%), Postives = 82/130 (63.08%), Query Frame = 2
Query:  275 EDVTQLIGKTPMVYLNTIVKGCV-------ANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAV 643
            E + +L+G TP+V     VK C+         I AKLE   P  SVKDR   SM  DA ++GLI  GK ++++ TSGNTGI LA + A+ G  + L MPA++S ER+ ++KAFGA+L LTD  +G +GA+
Sbjct:   23 ETILKLVGNTPLVR----VKKCLPEDIPEDVEIWAKLESFNPGGSVKDRPALSMFLDALKRGLIKEGK-VVIDATSGNTGIALAMVGAALGVPVELAMPANVSEERKKIIKAFGAKLYLTDPLEGTDGAI 147          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSM_PSESY (Cysteine synthase B (Fragment) OS=Pseudomonas syringae pv. syringae GN=cysM PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.889e-20
Identity = 55/122 (45.08%), Postives = 71/122 (58.20%), Query Frame = 2
Query:  275 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGA 640
            + +   +G TP+V L  +       +  KLE   P  SVKDR   SMI  AE +G I PG + L+E TSGNTGI LA  AA KGY++IL MP + S ER+  + A+GAEL+      G EGA
Sbjct:    6 QTIADCVGNTPLVRLQRMAGNTSNTLLLKLEGNNPAGSVKDRPALSMITRAELRGQIHPGDT-LIEATSGNTGIALAMAAAIKGYRMILIMPDNSSAERKAAMTAYGAELISVSKDDGMEGA 126          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: MCCA_BACSU (O-acetylserine dependent cystathionine beta-synthase OS=Bacillus subtilis GN=mccA PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.079e-20
Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = 2
Query:  263 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            + +  D+T+LIG TP++ L          + AKLE+M P  S+KDR+G  +I DA   G + PG  +++E T+GNTGIGLA  A   G K I  +P   S E++ +++A GA ++ T    G +GA+QK
Sbjct:    1 MTVITDITELIGNTPLLRLKNFDVPEGVAVYAKLEMMNPGGSIKDRLGDMLIRDALDSGKVKPG-GVIIEATAGNTGIGLALSARKYGLKAIFCVPEHFSREKQQIMQALGASIIHTPRQDGMQGAIQK 128          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK_EMENI (Cysteine synthase OS=Emericella nidulans GN=cysB PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.334e-19
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  281 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL 604
            +T+ IG TP++ L  + +   +NI AK E   P  SVKDR    ++ DAE++GL+ PG ++ VE T+GNTGIGLA +  SKGYKL++ MP + S  +  LL+  GAE+
Sbjct:   36 LTEAIGNTPLIRLKRLSEETGSNILAKAEFQNPGGSVKDRAALYVVKDAEERGLLKPGGTV-VEGTAGNTGIGLAHVCRSKGYKLVIYMPNTQSQGKIDLLRLLGAEV 142          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSM_MYCTU (Cysteine synthase B OS=Mycobacterium tuberculosis GN=cysM PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.251e-18
Identity = 56/130 (43.08%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  275 EDVTQLIGKTPMVYLNTIVK-------GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAV 643
            + + Q +G TP+V L  +         G    + AKLE   P  S+KDR    MI  AE  GL+ PG +IL EPTSGNTGI LA  A  KGY+LI  MP + S+ERR LL+ +GA+++ + +  G   AV
Sbjct:    5 DSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAV 133          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSM_MYCBO (Cysteine synthase B OS=Mycobacterium bovis GN=cysM PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.251e-18
Identity = 56/130 (43.08%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  275 EDVTQLIGKTPMVYLNTIVK-------GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAV 643
            + + Q +G TP+V L  +         G    + AKLE   P  S+KDR    MI  AE  GL+ PG +IL EPTSGNTGI LA  A  KGY+LI  MP + S+ERR LL+ +GA+++ + +  G   AV
Sbjct:    5 DSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAV 133          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK1_SCHPO (Cysteine synthase 1 OS=Schizosaccharomyces pombe GN=cys11 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.108e-18
Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  245 QTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL 604
            QT + G  I       IG+TP++ LNT+      NI AK E   P  SVKDR  + ++ DAE+KG ++ G +I VE T+GNTGIGLA IA ++GYK ++ MP + S  +   LK  GAE+
Sbjct:    7 QTKVPG--IVSGFIGAIGRTPLIRLNTLSNETGCNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLSRGGTI-VEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEV 123          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK_YEAST (Putative cysteine synthase OS=Saccharomyces cerevisiae GN=YGR012W PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.919e-15
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 2
Query:  275 EDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGK-SILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGA 598
            E V +LIG TP+V + ++ K    NI AKLE+  P  S KDR+  ++I  AE+ G +  G+   + E TSG+TGI +A +  + GY+  +++P   SLE+  LL++ GA
Sbjct:   47 EGVEELIGNTPLVKIRSLTKATGVNIYAKLELCNPAGSAKDRVALNIIKTAEELGELVRGEPGWVFEGTSGSTGISIAVVCNALGYRAHISLPDDTSLEKLALLESLGA 155          
The following BLAST results are available for this feature:
BLAST of FC921089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CYSM_CAMJE3.517e-2147.29Cysteine synthase B OS=Campylobacter jejuni GN=cys... [more]
CYSM_PSEAE1.023e-2046.67Cysteine synthase B OS=Pseudomonas aeruginosa GN=c... [more]
CYSM_AQUAE1.023e-2045.38Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3... [more]
CYSM_PSESY3.889e-2045.08Cysteine synthase B (Fragment) OS=Pseudomonas syri... [more]
MCCA_BACSU5.079e-2039.53O-acetylserine dependent cystathionine beta-syntha... [more]
CYSK_EMENI7.334e-1945.37Cysteine synthase OS=Emericella nidulans GN=cysB P... [more]
CYSM_MYCTU1.251e-1843.08Cysteine synthase B OS=Mycobacterium tuberculosis ... [more]
CYSM_MYCBO1.251e-1843.08Cysteine synthase B OS=Mycobacterium bovis GN=cysM... [more]
CYSK1_SCHPO8.108e-1844.17Cysteine synthase 1 OS=Schizosaccharomyces pombe G... [more]
CYSK_YEAST4.919e-1539.45Putative cysteine synthase OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionC32101A02EF RVDevelopN Citrus clementina cDNA clone C32101A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921089 ID=FC921089; Name=FC921089; organism=Citrus clementina; type=EST; length=651bp
GATCATCAGTTGGTCGTCAGACAGTTAGTCCCACAAAGTTCCAAAAACAA
TGGCCACTTCGTCTTCTCTGGTGTGCAGTCCGTTGACTGTTCCTCTCTGC
ATCTCCAAGAAATCATCATTGGCCACTCTGAAACTGGGCTACATTAGCCC
CATAACAGCAGCTCGAAGATTGAAGCAGAATTTGTACAAGGTCTCTTACA
AACCCTGCAACTCTGTTGTGTGCAAGGCTGTCTCTGTGAAGCCGCAGACT
GGGATTGAAGGTCTCAACATTGCTGAAGATGTCACTCAGCTTATTGGGAA
GACGCCAATGGTATACCTGAATACTATTGTCAAGGGGTGTGTTGCAAACA
TTGCTGCCAAGCTTGAAATCATGGAACCATGTTGTAGTGTTAAGGACAGG
ATTGGTTTCAGTATGATAGCTGATGCCGAGCAAAAAGGACTAATAACGCC
TGGAAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACTGGAATTGGCC
TTGCTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTTGACTATGCCA
GCCTCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCATTTGGAGCTGA
GCTTGTATTAACTGATTCAGCAAAAGGCATNGAAGGGGCTGTGCAGAAAG
C
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