FC921089

Overview
NameFC921089
Unique NameFC921089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSM_HELPY (Cysteine synthase OS=Helicobacter pylori GN=cysM PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.189e-14
Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 2
Query:  293 IGKTPMVYLNTIVKGCVANIA--AKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            IG+TP+            N A  AKLE + P  SVKDR+G  +I +  + G IT  K+ ++EPT+GNTGI LA +A     K I  +P   S E++ +++A GA ++ T +++G  GA++K
Sbjct:   11 IGRTPVFKFTNKDYPIPLNSAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKIT-SKTTIIEPTAGNTGIALALVAIKHHLKTIFVVPEKFSTEKQQIMRALGALVINTPTSEGISGAIKK 130          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK_DICDI (Cysteine synthase OS=Dictyostelium discoideum GN=cysK PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.439e-14
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAE 601
            I+  + + +G TP++ + ++ +     I  K E M P  S KDR+   +I D E+KGL+  G S +VE T+G+TGI L  +  S+GY + L +P ++S E+  LL+  GAE
Sbjct:   38 ISNGIIETVGNTPLIRIKSLSEATGCEIYGKAEFMNPGGSPKDRVAREIILDGEKKGLLKKG-STIVEATAGSTGISLTMLGKSRGYNVQLFIPDNVSKEKVDLLEMLGAE 147          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSM_HELPJ (Cysteine synthase OS=Helicobacter pylori J99 GN=cysM PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.854e-13
Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  350 IAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            I AKLE + P  SVKDR+G  +I +A +   IT   +I +EPT+GNTGI LA +A     K I  +P   S E++ +++A GA ++ T +++G  GA++K
Sbjct:   31 IYAKLEHLNPGGSVKDRLGQYLIKEAFRTRKITSTTTI-IEPTAGNTGIALALVAIKHHLKTIFVVPKKFSTEKQQIMRALGALVINTPTSEGISGAIKK 129          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK2_SCHPO (Cysteine synthase 2 OS=Schizosaccharomyces pombe GN=cys12 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.091e-12
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 2
Query:  266 NIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILV-EPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL 604
            +I   V  LIG T MV + ++ +    +I AK E + P  S KDR+   MI  AE+ G + P +S  V E T+G+TGI +A +  S GY   + MP+  S E+  +L+  GA +
Sbjct:   41 DIVNGVEGLIGNTKMVRIKSLSQATGCDILAKAEFLNPGNSPKDRVALQMIRTAEENGDLVPYQSNAVYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAHV 154          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: Y4XP_RHISN (Putative cysteine synthase OS=Rhizobium sp. (strain NGR234) GN=NGR_a00730 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.300e-11
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  281 VTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAEL 604
            VTQLIG+TP++ ++  V G  A +  K+E   P  S+KDR+  SM+  A Q G + PG +I VE +SGNTG GLA  A   G + I  +    + ++  +++A GAE+
Sbjct:    6 VTQLIGQTPVMSID--VPGRNATLVLKIEKNNPGGSMKDRMARSMVIAALQDGRLPPGGTI-VESSSGNTGTGLALAALEFGLRFIAVVDHHAAPDKIRMMRALGAEI 110          
The following BLAST results are available for this feature:
BLAST of FC921089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CYSM_HELPY3.189e-1438.02Cysteine synthase OS=Helicobacter pylori GN=cysM P... [more]
CYSK_DICDI5.439e-1436.94Cysteine synthase OS=Dictyostelium discoideum GN=c... [more]
CYSM_HELPJ7.854e-1341.00Cysteine synthase OS=Helicobacter pylori J99 GN=cy... [more]
CYSK2_SCHPO5.091e-1236.84Cysteine synthase 2 OS=Schizosaccharomyces pombe G... [more]
Y4XP_RHISN3.300e-1139.81Putative cysteine synthase OS=Rhizobium sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC32101A02EF RVDevelopN Citrus clementina cDNA clone C32101A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921089 ID=FC921089; Name=FC921089; organism=Citrus clementina; type=EST; length=651bp
GATCATCAGTTGGTCGTCAGACAGTTAGTCCCACAAAGTTCCAAAAACAA
TGGCCACTTCGTCTTCTCTGGTGTGCAGTCCGTTGACTGTTCCTCTCTGC
ATCTCCAAGAAATCATCATTGGCCACTCTGAAACTGGGCTACATTAGCCC
CATAACAGCAGCTCGAAGATTGAAGCAGAATTTGTACAAGGTCTCTTACA
AACCCTGCAACTCTGTTGTGTGCAAGGCTGTCTCTGTGAAGCCGCAGACT
GGGATTGAAGGTCTCAACATTGCTGAAGATGTCACTCAGCTTATTGGGAA
GACGCCAATGGTATACCTGAATACTATTGTCAAGGGGTGTGTTGCAAACA
TTGCTGCCAAGCTTGAAATCATGGAACCATGTTGTAGTGTTAAGGACAGG
ATTGGTTTCAGTATGATAGCTGATGCCGAGCAAAAAGGACTAATAACGCC
TGGAAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACTGGAATTGGCC
TTGCTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTTGACTATGCCA
GCCTCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCATTTGGAGCTGA
GCTTGTATTAACTGATTCAGCAAAAGGCATNGAAGGGGCTGTGCAGAAAG
C
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