FC921092

Overview
NameFC921092
Unique NameFC921092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.986e-26
Identity = 74/187 (39.57%), Postives = 106/187 (56.68%), Query Frame = 1
Query:   97 KQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI---HHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSRERL 648
            K   LK +  G+P  +D  +K   +   +++G   +L++ LYL+ DPYMR            S   G  + G  VA+VV+S +  F  G +V   +GW  +S I N + L K+       +PLS   G +GMPG+TA+ G  +IC  K GE + VSAA+GAVG +VGQ AKL GC VVG+AGS E++
Sbjct:    5 KSWTLKKHFVGYPTNSDFELKTVELP-PLKDGE--VLLEALYLTVDPYMRIMAK--------SLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHS-ISNGEKLEKVLAEWPDTLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKV 179          
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.435e-23
Identity = 71/198 (35.86%), Postives = 106/198 (53.54%), Query Frame = 1
Query:   97 KQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLI--KNPQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSRERLNY*RTVWIDDAF 684
            K   LK +  G+P  ++  +K   +   ++ G   +L++ L+L+ DPYMR                G  + G  VA+V++S +  F  G +V    GW  +S+   KN + L       +PLS   G +GMPG+TA+ G  +IC  K GE + V+AA+GAVG +VGQ AKL GC VVG+AGS E++   +    D AF
Sbjct:    5 KSWTLKKHFVGYPTPSNFELKTVELP-PLKNGE--VLLEALFLTVDPYMRIAAR--------KLKEGDMMMGEQVARVIESKNAAFPTGTIVVALLGWTTHSISDGKNLERLLAEWPDTLPLSLTLGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACLKKYGFDVAF 191          
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 64/181 (35.36%), Postives = 90/181 (49.72%), Query Frame = 1
Query:  127 GFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP---GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI--HHTDVPLSYYTGILGMPGMTAWAGFYE--ICAPKKGEYIYVSAASGAVGQLVGQFAKLMGC-YVVGSAGSRER 645
            G P   +  V+  ++   V EG   + V+ LYLS DPYMR RM  N+D      TP      ++G GV  + +S H  F KGD V       +  +I +   L K+     D  LSY+ G +GMPG+T+  G  E         + + VS A+GA G L GQ  +L+GC  VVG  G+ E+
Sbjct:   16 GHPVAENFRVEEVNLPDCVNEGQ--VQVRTLYLSVDPYMRCRM--NEDTGSDYITPWQLSQVVDGGGVGIIEESKHTNFMKGDFVTSFYWPWQTKVILDGNILEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEK 192          
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: PTGR2_MOUSE (Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 60/179 (33.52%), Postives = 91/179 (50.84%), Query Frame = 1
Query:  127 GFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDF-SSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI--HHTDVPLSYYTGILGMPGMTAWAGFYE--ICAPKKGEYIYVSAASGAVGQLVGQFAKLMGC-YVVGSAGSRER 645
            G P   +  V+  S+   + EG   + V+ LYLS DPYMR +M+ +   D+ + +      +G G+  V +S H +  KGD V       +   I +  GL K+     D  LSY+ G +GMPG+T+  G  E    +    + + VS A+GA G L GQ   L+GC  VVG  G++E+
Sbjct:   16 GNPVAENFRVEEFSLPDALNEGQ--VQVRTLYLSVDPYMRCKMNEDTGTDYLAPWQLAQVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEK 192          
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: PTGR2_RAT (Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 60/179 (33.52%), Postives = 89/179 (49.72%), Query Frame = 1
Query:  127 GFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDF-SSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI--HHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKG--EYIYVSAASGAVGQLVGQFAKLMGC-YVVGSAGSRER 645
            G P   +  V+  S+   + EG   + V+ LYLS DPYMR +M+     D+ + +      +G G+  + +S H +  KGD V       +   I +  GL K+     D  LSY+ G +GMPG+T+  G  E      G  + + VS A+GA G L GQ   L+GC  VVG  G+ E+
Sbjct:   16 GNPVAENFRVEEVSLPDTINEGQ--VRVRTLYLSVDPYMRCKMNEETGADYLAPWQLAQVADGGGLGVIEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTHEK 192          
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: PTGR2_PONAB (Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 57/163 (34.97%), Postives = 81/163 (49.69%), Query Frame = 1
Query:  181 VEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP---GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI--HHTDVPLSYYTGILGMPGMTAWAGFYE--ICAPKKGEYIYVSAASGAVGQLVGQFAKLMGC-YVVGSAGSRER 645
            + EG   + V+ LYLS DPYMR RM  N+D      TP      ++G G+  + +S H    KGD V       +  +I +   L K+     D  LSY+ G +GMPG+T+  G  E         + + VS A+GA G + GQ   L+GC  VVG  G+ E+
Sbjct:   34 INEGQ--VQVRTLYLSVDPYMRCRM--NEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHLLGCSRVVGICGTHEK 192          
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: PTGR2_HUMAN (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 56/163 (34.36%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  181 VEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP---GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI--HHTDVPLSYYTGILGMPGMTAWAGFYE--ICAPKKGEYIYVSAASGAVGQLVGQFAKLMGC-YVVGSAGSRER 645
            + EG   + V+ LYLS DPYMR RM  N+D      TP      ++G G+  + +S H    KGD V       +  +I +   L K+     D  LSY+ G +GMPG+T+  G  E         + + VS A+GA G + GQ    +GC  VVG  G+ E+
Sbjct:   34 INEGQ--VQVRTLYLSVDPYMRCRM--NEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEK 192          
The following BLAST results are available for this feature:
BLAST of FC921092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PTGR1_BOVIN8.986e-2639.57Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_PIG1.435e-2335.86Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]
PTGR2_BOVIN2.897e-1635.36Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
PTGR2_MOUSE1.101e-1533.52Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2... [more]
PTGR2_RAT1.878e-1533.52Prostaglandin reductase 2 OS=Rattus norvegicus GN=... [more]
PTGR2_PONAB7.136e-1534.97Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2... [more]
PTGR2_HUMAN2.076e-1434.36Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2... [more]

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Properties
Property NameValue
Genbank descriptionC32101A05EF RVDevelopN Citrus clementina cDNA clone C32101A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921092 ID=FC921092; Name=FC921092; organism=Citrus clementina; type=EST; length=687bp
GAAACACACCGCCACTCAGCAACCGAAGGAAGAAACAGAGTGAAACAAGG
AAGAAACAGAGCAACGATGGCGGCTAACAGTGAAGTGTTGAGCAACAAGC
AGGTGATATTAAAGAACTATGTAGAAGGGTTTCCCAAAGAGACAGACATG
TTGGTAAAAGCAAGTTCAATTTCATTGAAAGTAGAGGAAGGCTCAAATGC
AATTCTCGTCAAGAATCTTTACTTGTCTTGCGATCCTTACATGAGAGCTC
GCATGTCCTTTAATCAAGATCCTGATTTCTCTTCTTTCACTCCTGGCTCT
CCCATAGAAGGATTTGGAGTGGCTAAGGTGGTGGATTCAGGGCACCCAGA
ATTCAAGAAAGGAGATTTAGTCTGGGGAACAACTGGGTGGGAAGAGTATA
GTCTCATAAAAAATCCTCAGGGCCTCTTTAAAATTCATCACACTGATGTT
CCCCTTTCTTATTATACTGGAATTCTTGGTATGCCTGGGATGACAGCTTG
GGCTGGTTTTTATGAAATTTGTGCTCCAAAGAAAGGCGAATACATCTATG
TTTCTGCAGCATCTGGTGCAGTTGGTCAGCTTGTTGGGCAATTTGCAAAG
TTGATGGGTTGCTATGTTGTTGGAAGTGCTGGCAGTAGAGAAAGGTTGAA
CTACTAAAGAACAGTTTGGATTGATGATGCTTTCATT
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