FC921177

Overview
NameFC921177
Unique NameFC921177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921177 vs. ExPASy Swiss-Prot
Match: PSB9_BOVIN (Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 43/133 (32.33%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  218 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGS 616
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +  +IYC  +G+AAD +A+ DM + QL+LH         V+ A  +++   + Y+  + A L++ G D            G     PFA  GSGS
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYREDLSAHLMVAGWDQREGGQVYGTMSGMLIRQPFAIGGSGS 151          
BLAST of FC921177 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 45/134 (33.58%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  218 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGS 616
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   IYC  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D   G  ++     G     PFA  GSGS
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYREDLLAHLMVAGWDQHEGGQVYGTM-GGMLIRQPFAIGGSGS 151          
BLAST of FC921177 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 42/142 (29.58%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  221 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYP-HGSTDTLPFATMGSGSLAAMAMFE 640
            GTT VGL+ +DGV++  + RAT G  +  K  +KI+ +A  +    AG+  D + +  ++  +  L+     R+  V    TL    L +Y+ +     L++GG+D  G  +++I P  G+ +       GSGSL A  + E
Sbjct:   11 GTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLE 152          
BLAST of FC921177 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 42/133 (31.58%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  218 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGS 616
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTISGSGS 151          
BLAST of FC921177 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 49/150 (32.67%), Postives = 76/150 (50.67%), Query Frame = 2
Query:  221 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL-----FNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESNTRK 655
            GTT VGL+ ++GV+L ADTRA+ G I+  KN  KIH +  ++   GAG   D   +  ++ ++  L++   G+E  V    TLL   L     F Y G+     ++GG D   P L ++   G      +A  GSG   A ++ +S  R+
Sbjct:   10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGW----FLVGGYD-EKPRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYRE 154          
BLAST of FC921177 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 42/148 (28.38%), Postives = 76/148 (51.35%), Query Frame = 2
Query:  221 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTI-YPHGSTDTLPFATMGSGSLAAMAMFESNTRK 655
            GTT VG++  DG++L ++ RAT G  +  K  +K++ +   +    AG+  D + +  +VS + QL++     ES  +  +T L  +  +   Y  +   L++GGVD  GP ++++    GS +    +  GSGS  A  + E   R+
Sbjct:    9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRD-ESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRE 155          
BLAST of FC921177 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  218 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD 535
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124          
BLAST of FC921177 vs. ExPASy Swiss-Prot
Match: PSB9_MUSPL (Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  218 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD 535
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124          
BLAST of FC921177 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  218 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD 535
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124          
BLAST of FC921177 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  218 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD 535
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124          
The following BLAST results are available for this feature:
BLAST of FC921177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PSB9_BOVIN1.291e-1232.33Proteasome subunit beta type-9 OS=Bos taurus GN=PS... [more]
PSB9_RAT1.686e-1233.58Proteasome subunit beta type-9 OS=Rattus norvegicu... [more]
PSMB_ARCFU6.407e-1229.58Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSB9_MUSMB6.407e-1231.58Proteasome subunit beta type-9 OS=Mus musculus bac... [more]
PSMB_PYRFU8.368e-1232.67Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSMB_METTE1.093e-1128.38Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSB9_MUSSI1.093e-1133.02Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSPL1.093e-1133.02Proteasome subunit beta type-9 OS=Mus platythrix G... [more]
PSB9_MUSDU1.093e-1133.02Proteasome subunit beta type-9 OS=Mus dunni GN=Psm... [more]
PSB9_MOUSE1.093e-1133.02Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32102A08EF RVDevelopN Citrus clementina cDNA clone C32102A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921177 ID=FC921177; Name=FC921177; organism=Citrus clementina; type=EST; length=741bp
TAAGACTCGAAGTCGCTCGCTGTCGCTCGCTGTCGCTGCTGCTCTCCAAA
GCTCACGCCTTGTTTTCATTCCAGTGGGATCAATCTCAGGTTGAAGAAAG
TTTAAAATGTCAAACTCTGCAATAGATGTTCCTTCCAGGGGTGGATTTAG
TTTTGATCTCTGCCGGCGGAATGATATGCTTGCAAAGAAGGGTGTCAACC
TTCCATCTTTCCGAAAGACGGGGACGACCATTGTTGGGTTGATTTTCCAG
GATGGCGTCATTCTTGGGGCAGATACCAGAGCAACTGAAGGACCCATAGT
TTGCGATAAGAATTGTGAGAAAATTCATTACATGGCTCCAAACATATATT
GTTGTGGTGCAGGAACTGCTGCTGACACAGAGGCTGTAACTGACATGGTC
AGCTCACAGCTGCAGTTACATCGTTATCATACTGGTAGAGAGTCAAGGGT
TGTTACAGCACTGACTCTTCTCAAGAAGCACCTTTTCAACTACCAAGGTT
ATGTGCAAGCTGCTTTGGTTCTTGGTGGAGTTGATTGCACTGGACCTCAT
CTTCACACAATATATCCACATGGTTCAACTGACACTTTGCCATTTGCGAC
AATGGGCTCTGGTTCTCTTGCTGCCATGGCTATGTTTGAATCAAATACAA
GAAAGCCTGACTAAAGATGAGGATACAGCTAGTTGTGGACGCCATTGCTC
TGGTATATCATGACTTGGAGTGAAGCATGTGATGTCTGTGT
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