FC921177

Overview
NameFC921177
Unique NameFC921177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921177 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 46/144 (31.94%), Postives = 74/144 (51.39%), Query Frame = 2 
Query:  221 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVD-CTGPHLHTIYP-HGSTDTLPFATMGSGSLAAMAMFES 643
            GTT VGLI  D VIL  D RA+ G +V DK  +K++ +   I    AG+  D +A+  ++ ++ +L++  TGR    +   TLL   L + + +     +++GG D   G  L ++ P  G  +   F   GSGS  A  + E+
Sbjct:    6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEA 149
The following BLAST results are available for this feature:
BLAST of FC921177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PSMB_METJA2.435e-1131.94Proteasome subunit beta OS=Methanocaldococcus jann... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32102A08EF RVDevelopN Citrus clementina cDNA clone C32102A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921177 ID=FC921177; Name=FC921177; organism=Citrus clementina; type=EST; length=741bp
TAAGACTCGAAGTCGCTCGCTGTCGCTCGCTGTCGCTGCTGCTCTCCAAA
GCTCACGCCTTGTTTTCATTCCAGTGGGATCAATCTCAGGTTGAAGAAAG
TTTAAAATGTCAAACTCTGCAATAGATGTTCCTTCCAGGGGTGGATTTAG
TTTTGATCTCTGCCGGCGGAATGATATGCTTGCAAAGAAGGGTGTCAACC
TTCCATCTTTCCGAAAGACGGGGACGACCATTGTTGGGTTGATTTTCCAG
GATGGCGTCATTCTTGGGGCAGATACCAGAGCAACTGAAGGACCCATAGT
TTGCGATAAGAATTGTGAGAAAATTCATTACATGGCTCCAAACATATATT
GTTGTGGTGCAGGAACTGCTGCTGACACAGAGGCTGTAACTGACATGGTC
AGCTCACAGCTGCAGTTACATCGTTATCATACTGGTAGAGAGTCAAGGGT
TGTTACAGCACTGACTCTTCTCAAGAAGCACCTTTTCAACTACCAAGGTT
ATGTGCAAGCTGCTTTGGTTCTTGGTGGAGTTGATTGCACTGGACCTCAT
CTTCACACAATATATCCACATGGTTCAACTGACACTTTGCCATTTGCGAC
AATGGGCTCTGGTTCTCTTGCTGCCATGGCTATGTTTGAATCAAATACAA
GAAAGCCTGACTAAAGATGAGGATACAGCTAGTTGTGGACGCCATTGCTC
TGGTATATCATGACTTGGAGTGAAGCATGTGATGTCTGTGT
back to top