FC921180

Overview
NameFC921180
Unique NameFC921180
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921180 vs. ExPASy Swiss-Prot
Match: UBA3_YEAST (NEDD8-activating enzyme E1 catalytic subunit OS=Saccharomyces cerevisiae GN=UBA3 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.247e-22
Identity = 68/217 (31.34%), Postives = 105/217 (48.39%), Query Frame = 3
Query:   24 SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQV-KFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGI--PGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGC--SKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVC 659
            SFY DF  I+ GLD+IE R +IN      L  E++     E   P +DGGTEG KGH + IIPG+T C+EC+I   P Q    P+CT+A  PR   H +EY   I++ +++   + D      M+++  +  +RA  F I    ++ S   G++K                C  + +KI +     +  +N+   N   G  +   +F +  DC VC
Sbjct:   88 SFYKDFQFIISGLDAIEPRRFINETLVK-LTLESN----YEICIPFIDGGTEGLKGHVKTIIPGITACWECSIDTLPSQQDTVPMCTIANNPRCIEHVVEYVSTIQYPDLNIESTAD------MEFLLEKCCERAAQFSISTEKLSTSFILGIIKSIIPSVSTTNAMVAATCCTQMVKIYNDLIDLENGNNFTLINCSEGCFMYSFKFERLPDCTVC 293          
BLAST of FC921180 vs. ExPASy Swiss-Prot
Match: UBA2_YEAST (Ubiquitin-activating enzyme E1-like OS=Saccharomyces cerevisiae GN=UBA2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.112e-13
Identity = 41/131 (31.30%), Postives = 68/131 (51.91%), Query Frame = 3
Query:   21 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEA 413
            + ++  F+II   LD++ AR Y+N ++  FL              P+++ GT GF G+ + IIPG T CFECT    P    FP+CT+  TP    HCI +A    ++++ + ++   +D  +  W   +A
Sbjct:  107 LHWFEQFDIIFNALDNLAARRYVNKIS-QFLSL------------PLIESGTAGFDGYMQPIIPGKTECFECTKKETPK--TFPVCTIRSTPSQPIHCIVWAKNFLFNQLFASETSGNEDDNNQDWGTDDA 222          
The following BLAST results are available for this feature:
BLAST of FC921180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
UBA3_YEAST4.247e-2231.34NEDD8-activating enzyme E1 catalytic subunit OS=Sa... [more]
UBA2_YEAST2.112e-1331.30Ubiquitin-activating enzyme E1-like OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionC32102B01EF RVDevelopN Citrus clementina cDNA clone C32102B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921180 ID=FC921180; Name=FC921180; organism=Citrus clementina; type=EST; length=764bp
GCCGAATTGAGGATAAAGACATTTCATTTTACAATGATTTTAATATCATT
GTCCTTGGTCTCGATTCCATCGAGGCTCGGAGTTATATAAATGCTGTAGC
ATGTAGTTTTCTTGAATATGAGACTGATGACAAGCCACGAGAAGAAACAA
TCAAACCCATGGTAGATGGGGGTACTGAAGGTTTTAAGGGTCATGCAAGG
GTTATTATACCAGGAGTCACACCGTGCTTTGAGTGTACCATCTGGCTTTT
CCCCCCTCAAGTGAAGTTTCCTTTATGCACTCTTGCGGAAACCCCTAGAA
CAGCTGCTCATTGTATTGAATATGCCCATTTAATCAAGTGGGATGAGGTG
CACAGTGGAAAGTCTTTTGATCCAGATGACCCGGAACATATGCAGTGGGT
CTATTCCGAGGCCGTCAAGAGAGCTGAGCTTTTTGGCATTCCTGGAGTTA
CATATTCTCTGACTCAGGGTGTTGTGAAAAACATCATACCAGCTATTGCT
TCCACCAATGCAATTATATCAGCAGCATGTGCTCTTGAAACATTGAAGAT
TGCATCAGGATGCAGCAAAACTCTATCAAATTATCTAACTTATAATGGTG
TTGCAGGTCTACACATAAAAGTTACTGAATTCGTGAAGGACAAGGACTGT
CTTGTATGTGGTCCAGGTGTTCTTATTGAATTGGACACTTTAGTTACTCT
AGAAAAGTCATTATCTACTTGAAGAGCATCTAGCTGCAGTAGCAAAGCAG
TGTCACATACCGAG
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