FC921186

Overview
NameFC921186
Unique NameFC921186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.140e-39
Identity = 75/137 (54.74%), Postives = 93/137 (67.88%), Query Frame = 1
Query:   85 EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRVDANHHHHQNRSKVEKKPKTRSSSGVVPRPQ 495
            +GL +GAW   ED +L   I  YGEGKW  +P  AGL RC KSCRLRW+NYL+P IKRG  S DE DL++RLH+LLGNRW+LIAGRLPGRT ND+KNYWNT LSK+ +        +  +   P T +    V +P+
Sbjct:    6 KGLRKGAWTTEEDSLLRQCINKYGEGKWHQVPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKKHEPCCKIKMKKRDITPIPTTPALKNNVYKPR 142          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.945e-39
Identity = 72/120 (60.00%), Postives = 92/120 (76.67%), Query Frame = 1
Query:   73 CSKGEG---LNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRVDANHHH 423
            C + EG   + RG WK  ED IL  Y++ +GEG W  I + +GLKR GKSCRLRW NYLRP+IKRG+ S  E+DLI+R+HKLLGNRW+LIAGRLPGRTDN++KNYWNT L+K+ ++   +
Sbjct:    3 CKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQN 122          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.151e-38
Identity = 70/108 (64.81%), Postives = 81/108 (75.00%), Query Frame = 1
Query:   85 EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRVD 408
            +GL +G W   ED +L   I  YGEGKW  +P   GL RC KSCRLRW+NYL+P IKRG    DE DL++RLHKLLGNRW+LIAGRLPGRT ND+KNYWNT LSK+ D
Sbjct:    6 KGLRKGTWTTEEDILLRQCIDKYGEGKWHRVPLRTGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKKHD 113          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.809e-38
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 1
Query:   97 RGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRV 405
            +G W   ED IL DY+  +G G+W  I +  GLKRCGKSCRLRWMNYL P++ +GNF++ EEDLI+RLHKLLGNRW+LIA R+PGRTDN +KNYWNT LSK++
Sbjct:   16 KGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 118          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.809e-38
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 1
Query:   97 RGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRV 405
            +G W   ED IL DY+  +G G+W  I +  GLKRCGKSCRLRWMNYL P++ +GNF++ EEDLI+RLHKLLGNRW+LIA R+PGRTDN +KNYWNT LSK++
Sbjct:   16 KGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 118          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.258e-38
Identity = 101/248 (40.73%), Postives = 122/248 (49.19%), Query Frame = 1
Query:   61 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKR-----VDANHH-------------------------------HHQNRSKVEKKP----KTRSSSGVVPRPQYKKTEKHXXXXXXXXXXXXREAPILFDYVPVQSQCSYGCKEEKSSGS--------DHEYTVDF 660
            + PCC K  GL RG W + ED+ L  +I   G   WR IPK AGL RCGKSCRLRW NYLRPD+KRG FS+ EE+LI+ LH  LGNRW+ IA +LPGRTDN+IKNYWNT+L KR     +D N H                                 + RSK + KP    K R   G  P PQ K  +              + +PI  +  P    C+Y    E SS S        DH  + DF
Sbjct:    3 RKPCCEK-VGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQGLDPNTHLPLEDSKLDDTEDDTDDEGGDSSDVTMSDASKSEKRSKKKSKPKETVKVRQPKGPKPAPQLKMCQSDEGPVLLKVPKAPK-SPISVNPGP---GCNYDDDSEHSSSSTVTTKSHEDHRDSSDF 245          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.056e-37
Identity = 69/112 (61.61%), Postives = 86/112 (76.79%), Query Frame = 1
Query:   70 CCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRV 405
            CC K + L +G W   ED+ L +YI  +G G W  +PK AGL+RCGKSCRLRW+NYLRPD+KRG FS+DEE LI+ LH  LGNRW+ IA RLPGRTDN+IKN+WN+ L K++
Sbjct:    6 CCFK-QKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKL 116          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.180e-36
Identity = 73/142 (51.41%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   61 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRV------DANHHHHQNRSKVEKKPKTRS 468
            + PCC K  G+ +G W A EDK L  +I   G+  WR +PK AGLKRCGKSCRLRW NYLRPD+KRG  S  EE L++ LH  LGNRW+ IA RLPGRTDN+IKN+WNT + K++         H   +  + +  +P T S
Sbjct:    3 RQPCCDK-LGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLKKEANLSDQPTTES 143          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.857e-36
Identity = 69/116 (59.48%), Postives = 82/116 (70.69%), Query Frame = 1
Query:   61 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRVD 408
            + PCC K  G+ +G W   ED IL  YI+ +G G WR IP   GL RC KSCRLRW NYLRP IKRG+F++ EE +I+ L  LLGNRWA IA  LP RTDNDIKNYWNT L K+++
Sbjct:    3 RPPCCDK-IGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLE 117          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.226e-35
Identity = 67/116 (57.76%), Postives = 85/116 (73.28%), Query Frame = 1
Query:   61 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEG-KWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRV 405
            + PCC K + + RG W   ED  L DYI+ YG G  W   P  AGL+RCGKSCRLRW+NYLRP+IK G+FS++E+ +I  L   +G+RW++IA  LPGRTDNDIKNYWNTKL K++
Sbjct:    3 RAPCCDKTK-VKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKL 117          
The following BLAST results are available for this feature:
BLAST of FC921186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB75_ARATH1.140e-3954.74Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MYB82_ARATH1.945e-3960.00Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
MY113_ARATH2.151e-3864.81Transcription factor MYB113 OS=Arabidopsis thalian... [more]
GL1_ARATH2.809e-3865.05Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY2.809e-3865.05Trichome differentiation protein GL1 OS=Arabidopsi... [more]
MYB2_PHYPA6.258e-3840.73Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYB86_ARATH4.056e-3761.61Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
ODO1_PETHY1.180e-3651.41Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB06_ANTMA5.857e-3659.48Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
RAX1_ARATH2.226e-3557.76Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC32102B08EF RVDevelopN Citrus clementina cDNA clone C32102B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921186 ID=FC921186; Name=FC921186; organism=Citrus clementina; type=EST; length=702bp
GGAAACAGAACTCTTAATCGGAGAGGAAAAGTTGTTAAGAGTCAAATGGC
GGGTAAGCGCAAGACTCCTTGCTGCTCTAAAGGGGAGGGACTCAACAGAG
GAGCTTGGAAAGCCGTTGAAGACAAAATCCTCACAGATTACATCAAGGCT
TATGGTGAAGGAAAATGGAGGCACATTCCCAAAGCTGCAGGTCTTAAGAG
ATGCGGGAAGAGTTGTAGGCTGCGGTGGATGAATTATCTAAGACCTGACA
TCAAGAGAGGCAACTTTTCTAAAGATGAAGAAGATCTCATCGTTAGACTT
CACAAGCTCTTAGGCAACAGATGGGCTCTTATAGCTGGGAGACTTCCAGG
ACGAACAGATAATGATATCAAGAATTACTGGAACACCAAGTTATCCAAGA
GAGTAGACGCAAATCATCATCATCATCAAAACCGTTCCAAAGTTGAGAAG
AAACCAAAGACCAGATCGAGCTCAGGTGTTGTGCCGCGCCCCCAATACAA
AAAAACTGAGAAACATGACGCTGCTGGCGGTGTTGCTGATGACGATGATG
ATCGGGAGGCTCCAATTTTATTTGACTATGTGCCTGTACAATCTCAGTGC
AGTTATGGGTGTAAAGAAGAAAAATCCTCCGGCTCTGATCATGAGTACAC
GGTGGATTTTGATGTTGGGGGAAAAAGCCTCTTGGATCTTCTTGATGCTA
TC
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