FC921237

Overview
NameFC921237
Unique NameFC921237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 31/90 (34.44%), Postives = 54/90 (60.00%), Query Frame = 3
Query:  153 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGAR 422
            +++  ++F  KVL +   V+V+F+APWCG C+ + PI +K A    G  T+A ++ +++   A + GI+G PT+ +F  G+      GAR
Sbjct:    5 IEVHDSDFAEKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFKDGREVGRLVGAR 94          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_RICCN (Thioredoxin OS=Rickettsia conorii GN=trxA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 33/98 (33.67%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  168 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFVLQQI 461
            ++FK +VL ++  VLV+F+A WCG C+ LTPI ++ +  L+G   V  ++ +E+ +   EYGIR  PTI +F  G+      G +    + +++ + I
Sbjct:    8 SSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELQGKVKVLKMNIDENPNTPSEYGIRSIPTIMLFKNGEQKDTKIGLQQKNSLLDWINKSI 105          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_RHORU (Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 34/98 (34.69%), Postives = 54/98 (55.10%), Query Frame = 3
Query:  156 QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            Q++  +F+  VL A+G   V+F+A WCG C+   P  E+ AT L    TVA ++ +E+     +YG+RG PT+ +F  G+      GA     + E+V
Sbjct:    3 QVSDASFEEDVLKADGPNXVDFWAEWCGPCRQXAPALEELATALGDKVTVAKINIDENPQTPSKYGVRGIPTLMIFKDGQVAATKIGALPKTKLFEWV 100          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 34/98 (34.69%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAE 443
            +V++T ++F SK+   +GV LV+F+A WCG C+ + P+ E+ A    G A +  LD +E+ S A +Y +   PT+ +F  G+P     G +  + +AE
Sbjct:    3 IVKVTDSDFDSKI--ESGVKLVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAE 98          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 34/98 (34.69%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAE 443
            +V++T ++F SK+   +GV LV+F+A WCG C+ + P+ E+ A    G A +  LD +E+ S A +Y +   PT+ +F  G+P     G +  + +AE
Sbjct:    3 IVKVTDSDFDSKI--ESGVKLVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAE 98          
The following BLAST results are available for this feature:
BLAST of FC921237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
THIO_CHLAA4.580e-1134.44Thioredoxin OS=Chloroflexus aurantiacus (strain AT... [more]
THIO_RICCN5.982e-1133.67Thioredoxin OS=Rickettsia conorii GN=trxA PE=3 SV=... [more]
THIO_RHORU5.982e-1134.69Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 ... [more]
THIO_STAES7.813e-1134.69Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ7.813e-1134.69Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC32102G03EF RVDevelopN Citrus clementina cDNA clone C32102G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921237 ID=FC921237; Name=FC921237; organism=Citrus clementina; type=EST; length=676bp
GGAGTCTGGGAAGAAAGAAAAAGAAAATTAAAAATTTCTCGAGAAAGTGA
CGGAAAATGCGCAGATCACAATTGCTTGTCATTTTAACAATCTTCTCATT
CTTTGCGCGCTTCAATCTCAGTGATGCATTGTATGGTTCATAATCACCAG
TAGTTCAGCTCACTCCTAACAACTTCAAGTCCAAGGTCCTGAATGCCAAT
GGAGTTGTGTTGGTTGAGTTCTATGCACCTTGGTGTGGTCATTGTCAAGC
TTTGACACCCATATGGGAGAAAGCAGCTACTGTCTTGAAAGGTGTCGCTA
CTGTGGCAGCTCTTGATGCCAATGAACACCAGTCCCTTGCTCAGGAATAT
GGGATCAGAGGATTCCCAACCATAAAGATGTTTGTACCAGGGAAGCCTCC
AGTAGATTACCAAGGAGCTAGGGATGTCAAACCTATTGCAGAATTTGTAC
TTCAACAGATAAAGGCACTATTGAAGGAACGTCTAAGTGGGAAAGCAACT
GGAGGATCAAGTGATAAATCTAAATCTGATTCTAATGAGTCTATAGAATT
GAATTCTAGCAATTTTGATGAGTTGGTGCTCAAAAGCAAAGATCTTTGGA
TTGTGGAGTTTTTTGCACCTTGGTGTGGACACTGCAAAAAGCTGGCTCCT
GAGTGGAAAGAAGCTGCTAATAACTT
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