FC921237

Overview
NameFC921237
Unique NameFC921237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDIA2_HUMAN (Protein disulfide-isomerase A2 OS=Homo sapiens GN=PDIA2 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = 3
Query:  189 LNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGFPTIKMFVPGK--PPVDYQGARDVKPIAEFVLQQI 461
            L  +  +LVEFYAPWCGHCQAL P + KAA VL     V T+A +D    + LA+E+G+  +PT+K F  G    P +Y G RD + IAE++ +++
Sbjct:   56 LREHPALLVEFYAPWCGHCQALAPEYSKAAAVLAAESMVVTLAKVDGPAQRELAEEFGVTEYPTLKFFRNGNRTHPEEYTGPRDAEGIAEWLRRRV 151          

HSP 2 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 31/103 (30.10%), Postives = 53/103 (51.46%), Query Frame = 3
Query:  147 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFV--PGKPPVDYQGARDVKPIAEFV 449
            PV  L   NF+    +    V V+FYAPWC HC+ + P WE  A   +    +   + +   +    + + GFPT+K F   PG+  ++Y+  RD++  ++F+
Sbjct:  389 PVKTLVGKNFEQVAFDETKNVFVKFYAPWCTHCKEMAPAWEALAEKYQDHEDIIIAELDATANELDAFAVHGFPTLKYFPAGPGRKVIEYKSTRDLETFSKFL 491          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDIA1_MOUSE (Protein disulfide-isomerase OS=Mus musculus GN=P4hb PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT---VAALDANEHQSLAQEYGIRGFPTIKMFVPG--KPPVDYQGARDVKPIAEFV 449
            V+ L  +NF+ + L A+  +LVEFYAPWCGHC+AL P + K A  LK   +   +A +DA E   LAQ+YG+RG+PTIK F  G    P +Y   R+   I  ++
Sbjct:   28 VLVLKKSNFE-EALAAHKYLLVEFYAPWCGHCKALAPEYAKRAAKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWL 131          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDI1_CAEEL (Protein disulfide-isomerase 1 OS=Caenorhabditis elegans GN=pdi-1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT---VAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            V+ LT +NF+ + +N N  VLV+FYAPWC HC++L P +++AA +LK   +   +A +DA E+Q+LA ++ +RG+PTI  F  GK P  Y G R    I ++V
Sbjct:   25 VLVLTESNFE-ETINGNEFVLVKFYAPWCVHCKSLAPKYDEAADLLKEEGSDIKLAKVDATENQALASKFEVRGYPTILYFKSGK-PTKYTGGRATAQIVDWV 125          

HSP 2 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  147 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALDANEHQSLAQEYGIRGFPTIKMFVPG-KPPVDYQGARDVKPIAEFV 449
            PV  L  +NF    L+    V V+FYAPWCGHC+ L P+W++ A   +      +A LDA  ++    +  +  FPT+K++  G   PVDY G R+++   EFV
Sbjct:  364 PVKVLVASNFNEIALDETKTVFVKFYAPWCGHCKQLVPVWDELAEKYESNPNVVIAKLDATLNE--LADVKVNSFPTLKLWPAGSSTPVDYDGDRNLEKFEEFV 465          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDI_DROME (Protein disulfide-isomerase OS=Drosophila melanogaster GN=Pdi PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVL---KGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFVLQQ 458
            V+  T +NFK  + + N  VLVEFYAPWCGHC+AL P + KAA  L   +    +A +DA     LA++Y +RG+PT+K F  G  PV+Y G R    I  +V ++
Sbjct:   29 VLVATVDNFKQLIAD-NEFVLVEFYAPWCGHCKALAPEYAKAAQQLAEKESPIKLAKVDATVEGELAEQYAVRGYPTLKFFRSGS-PVEYSGGRQAADIIAWVTKK 132          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDIA1_RABIT (Protein disulfide-isomerase OS=Oryctolagus cuniculus GN=P4HB PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT---VAALDANEHQSLAQEYGIRGFPTIKMFVPG--KPPVDYQGARDVKPIAEFV 449
            V+ L  +NF  + L A+  +LVEFYAPWCGHC+AL P + KAA  LK   +   +A +DA E   LAQ+YG+RG+PTIK F  G    P +Y   R+   I  ++
Sbjct:   27 VLVLKSSNFAEE-LAAHKHLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSDIRLAKVDATEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWL 130          

HSP 2 Score: 72.7886 bits (177), Expect = 1.860e-12
Identity = 35/103 (33.98%), Postives = 50/103 (48.54%), Query Frame = 3
Query:  147 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFV--PGKPPVDYQGARDVKPIAEFV 449
            PV  L   NF+    +    V VEFYAPWCGHC+ L PIW+K     K    +     +   +  +   +  FPT+K F   PG+  +DY G R +    +F+
Sbjct:  369 PVKVLVGKNFEEVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKEHQDIVIAKMDSTANEVEAVKVHSFPTLKFFPAGPGRTVIDYNGERTLDGFKKFL 471          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDI_YEAST (Protein disulfide-isomerase OS=Saccharomyces cerevisiae GN=PDI1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.376e-15
Identity = 43/119 (36.13%), Postives = 75/119 (63.03%), Query Frame = 3
Query:  111 FNLSDALYGS*SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAA-TVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPG--KPPVDYQGARDVKPIAEFVLQQ 458
            F   +A+    S VV+L  ++F ++ + ++ +VL EF+APWCGHC+ + P + KAA T+++   T+A +D  E+Q L  E+ I GFP++K+F        +DY+G R  + I +F+++Q
Sbjct:   21 FAQQEAVAPEDSAVVKLATDSF-NEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQ 138          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDI_WHEAT (Protein disulfide-isomerase OS=Triticum aestivum GN=PDI PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.797e-15
Identity = 46/116 (39.66%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK---GVATVAALDANEHQS--LAQEYGIRGFPTIKMF-VPGKPPVDYQGARDVKPIAEFVLQQIKALLKE 479
            V+ L  +NF   +   +  +LVEFYAPWCGHC++L P +EKAA +L        +A +DAN+ ++  LA +Y ++GFPT+K+F   GK   +Y+G R+ + I E++ +Q+    KE
Sbjct:   41 VLTLHADNFDDAIAK-HPFILVEFYAPWCGHCKSLAPEYEKAAQLLSKHDPAIVLAKVDANDEKNKPLAGKYEVQGFPTLKIFRSGGKNIQEYKGPREAEGIVEYLKKQVGPASKE 155          

HSP 2 Score: 72.7886 bits (177), Expect = 1.860e-12
Identity = 35/103 (33.98%), Postives = 56/103 (54.37%), Query Frame = 3
Query:  147 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV--ATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            PV  +  +N    V  +   VL+EFYAPWCGHC+ L PI ++AA  L+      +A +DA  +  +  E+ ++G+PT+    P    V Y+G R    I +++
Sbjct:  383 PVKVVVADNIHDVVFKSAKNVLIEFYAPWCGHCKKLAPILDEAAATLQSEEDVVIAKIDATAN-DVPGEFDVQGYPTLYFVTPSGKKVSYEGGRTADEIVDYI 484          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDI_HORVU (Protein disulfide-isomerase OS=Hordeum vulgare GN=PDI PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.797e-15
Identity = 46/116 (39.66%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK---GVATVAALDANEHQS--LAQEYGIRGFPTIKMF-VPGKPPVDYQGARDVKPIAEFVLQQIKALLKE 479
            V+ L  +NF   +   +  +LVEFYAPWCGHC++L P +EKAA +L        +A +DAN+ ++  LA +Y ++GFPT+K+F   GK   +Y+G R+ + I E++ +Q+    KE
Sbjct:   40 VLTLHADNFDDAI-GQHPFILVEFYAPWCGHCKSLAPEYEKAAQLLSKHDPAIVLAKVDANDEKNKPLAGKYEVQGFPTLKIFRNGGKSIQEYKGPREAEGIVEYLKKQVGPASKE 154          

HSP 2 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  147 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV--ATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            PV  +  +N    V  +   VL+EFYAPWCGHC+ L PI ++AA  L+      +A +DA E+  +  E+ ++G+PT+    P    V Y+G R    I +++
Sbjct:  382 PVKVVVADNVHDVVFKSGKNVLIEFYAPWCGHCKKLAPILDEAAATLQSEEDVVIAKMDATEN-DVPGEFDVQGYPTLYFVTPSGKKVSYEGGRTADEIVDYI 483          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDI_DATGL (Protein disulfide-isomerase OS=Datisca glomerata GN=PDI PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.797e-15
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANE--HQSLAQEYGIRGFPTIKMF-VPGKPPVDYQGARDVKPIAEFVLQQ 458
            V+ L  +NF   V   N +V VEFYAPWCGHC+ L P +EKAA++L        +A +DANE  ++ LA E+ +RGFPTIK+    GK   +Y+G RD   I +++ +Q
Sbjct:   35 VLTLDKSNFFDTVSKHNFIV-VEFYAPWCGHCKKLAPEYEKAASILSSHDPPVILAKVDANEEANKELASEFEVRGFPTIKILRNGGKIVQEYKGPRDADGIVDYLKKQ 142          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDIA1_CHICK (Protein disulfide-isomerase OS=Gallus gallus GN=P4HB PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.797e-15
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT---VAALDANEHQSLAQEYGIRGFPTIKMFVPG--KPPVDYQGARDVKPIAEFV 449
            V+ L   NF+ + L A+  +LVEFYAPWCGHC+AL P + KAA  LK   +   +A +DA E   LAQ++G+RG+PTIK F  G    P +Y   R+   I  ++
Sbjct:   31 VLVLRAANFE-QALAAHRHLLVEFYAPWCGHCKALAPEYAKAAAQLKAEGSEIRLAKVDATEEAELAQQFGVRGYPTIKFFRNGDKAAPREYTAGREADDIVSWL 134          

HSP 2 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 35/103 (33.98%), Postives = 51/103 (49.51%), Query Frame = 3
Query:  147 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFV--PGKPPVDYQGARDVKPIAEFV 449
            PV  L   NF+    + N  V VEFYAPWCGHC+ L PIW+K     +    +     +   +  +   I  FPT+K F    G+  +DY G R ++   +F+
Sbjct:  373 PVKVLVGKNFEEVAFDENKNVFVEFYAPWCGHCKQLAPIWDKLGETYRDHENIVIAKMDSTANEVEAVKIHSFPTLKFFPAGSGRNVIDYNGERTLEGFKKFL 475          
The following BLAST results are available for this feature:
BLAST of FC921237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
PDIA2_HUMAN2.772e-1644.79Protein disulfide-isomerase A2 OS=Homo sapiens GN=... [more]
PDIA1_MOUSE2.772e-1643.81Protein disulfide-isomerase OS=Mus musculus GN=P4h... [more]
PDI1_CAEEL2.772e-1643.69Protein disulfide-isomerase 1 OS=Caenorhabditis el... [more]
PDI_DROME3.621e-1643.40Protein disulfide-isomerase OS=Drosophila melanoga... [more]
PDIA1_RABIT3.621e-1644.76Protein disulfide-isomerase OS=Oryctolagus cunicul... [more]
PDI_YEAST1.376e-1536.13Protein disulfide-isomerase OS=Saccharomyces cerev... [more]
PDI_WHEAT1.797e-1539.66Protein disulfide-isomerase OS=Triticum aestivum G... [more]
PDI_HORVU1.797e-1539.66Protein disulfide-isomerase OS=Hordeum vulgare GN=... [more]
PDI_DATGL1.797e-1544.04Protein disulfide-isomerase OS=Datisca glomerata G... [more]
PDIA1_CHICK1.797e-1543.81Protein disulfide-isomerase OS=Gallus gallus GN=P4... [more]

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Properties
Property NameValue
Genbank descriptionC32102G03EF RVDevelopN Citrus clementina cDNA clone C32102G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921237 ID=FC921237; Name=FC921237; organism=Citrus clementina; type=EST; length=676bp
GGAGTCTGGGAAGAAAGAAAAAGAAAATTAAAAATTTCTCGAGAAAGTGA
CGGAAAATGCGCAGATCACAATTGCTTGTCATTTTAACAATCTTCTCATT
CTTTGCGCGCTTCAATCTCAGTGATGCATTGTATGGTTCATAATCACCAG
TAGTTCAGCTCACTCCTAACAACTTCAAGTCCAAGGTCCTGAATGCCAAT
GGAGTTGTGTTGGTTGAGTTCTATGCACCTTGGTGTGGTCATTGTCAAGC
TTTGACACCCATATGGGAGAAAGCAGCTACTGTCTTGAAAGGTGTCGCTA
CTGTGGCAGCTCTTGATGCCAATGAACACCAGTCCCTTGCTCAGGAATAT
GGGATCAGAGGATTCCCAACCATAAAGATGTTTGTACCAGGGAAGCCTCC
AGTAGATTACCAAGGAGCTAGGGATGTCAAACCTATTGCAGAATTTGTAC
TTCAACAGATAAAGGCACTATTGAAGGAACGTCTAAGTGGGAAAGCAACT
GGAGGATCAAGTGATAAATCTAAATCTGATTCTAATGAGTCTATAGAATT
GAATTCTAGCAATTTTGATGAGTTGGTGCTCAAAAGCAAAGATCTTTGGA
TTGTGGAGTTTTTTGCACCTTGGTGTGGACACTGCAAAAAGCTGGCTCCT
GAGTGGAAAGAAGCTGCTAATAACTT
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