FC921237

Overview
NameFC921237
Unique NameFC921237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDI_MEDSA (Protein disulfide-isomerase OS=Medicago sativa GN=PDI PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15
Identity = 52/134 (38.81%), Postives = 79/134 (58.96%), Query Frame = 3
Query:   75 LVILTIFSFFARFNLSDALYGS*SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVL---KGVATVAALDANE--HQSLAQEYGIRGFPTIKMF-VPGKPPVDYQGARDVKPIAEFVLQQ 458
            L++L     FA  + +DA       V+ L   NF   V   +  ++VEFYAPWCGHC+ L P +EKAA++L   +    +A +DANE  ++ LA E  ++GFPTIK+F   GK   +Y+G R+ + I E++ +Q
Sbjct:   14 LLLLVPSQIFAEESSTDAK----EFVLTLDNTNFHDTV-KKHDFIVVEFYAPWCGHCKKLAPEYEKAASILSTHEPPVVLAKVDANEEHNKDLASENDVKGFPTIKIFRNGGKNIQEYKGPREAEGIVEYLKKQ 142          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDIA2_PONAB (Protein disulfide-isomerase A2 OS=Pongo abelii GN=PDIA2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.003e-15
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  189 LNANGVVLVEFYAPWCGHCQALTPIWEKAATVL---KGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGK--PPVDYQGARDVKPIAEFVLQQI 461
            L  +  +LVEFYAPWCGHCQAL P + KAA VL     V  +A +D      LA+E+G+  +PT+K F  G    P +Y G R+ + IAE++ +++
Sbjct:   56 LREHPALLVEFYAPWCGHCQALAPEYSKAAAVLAAESSVVMLAKVDGPAQPELAEEFGVTEYPTLKFFRDGNRTHPEEYTGPREAEGIAEWLRRRV 151          

HSP 2 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 32/103 (31.07%), Postives = 52/103 (50.49%), Query Frame = 3
Query:  147 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFV--PGKPPVDYQGARDVKPIAEFV 449
            PV  L   NF+    +    V V+FYAPWC HC+ + P WE  A   +    V   + +   +    + + GFPT+K F   PG+  ++Y+  RD+   ++F+
Sbjct:  389 PVKTLVGKNFEQVAFDETKNVFVKFYAPWCTHCKEMAPAWEALAEKYQDHEDVIIAELDATANELDAFAVHGFPTLKYFPAGPGRKVIEYKSTRDLGTFSKFL 491          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: TMX3_MOUSE (Protein disulfide-isomerase TMX3 OS=Mus musculus GN=Tmx3 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  210 LVEFYAPWCGHCQALTPIWEKAATVLKGVAT---VAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFVLQQIKALLK 476
            LV+FYAPWCGHC+ L PIW +    +K + +   V  +DA  + S+A E+G+RG+PTIK+ + G    +Y+G R    I EF  +   AL++
Sbjct:   48 LVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKL-LKGDLAYNYRGPRTKDDIIEFAHRVSGALIR 138          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: TMX3_HUMAN (Protein disulfide-isomerase TMX3 OS=Homo sapiens GN=TMX3 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  210 LVEFYAPWCGHCQALTPIWEKAATVLKGVAT---VAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFVLQQIKALLK 476
            LV+FYAPWCGHC+ L PIW +    +K + +   V  +DA  + S+A E+G+RG+PTIK+ + G    +Y+G R    I EF  +   AL++
Sbjct:   45 LVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKL-LKGDLAYNYRGPRTKDDIIEFAHRVSGALIR 135          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDI1_SCHPO (Putative protein disulfide-isomerase C1F5.02 OS=Schizosaccharomyces pombe GN=SPAC1F5.02 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 45/146 (30.82%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  180 SKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVL-KGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFVLQQIKALLKERLSGKATXXXXXXXXXXXNESIELNSSNFDELVLKSKDLWIVEFF 614
            ++++ A+ V++V+FYAPWCGHC+AL P +E AA  L K   ++  +D  E   L  EY IRG+PT+ +F  GK    Y G R    + +++ +Q+   +K                        ++    +  V K+ DL +V FF
Sbjct:   33 NELITADKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTLNVFKNGKQISQYSGPRKHDALVKYMRKQLLPTVK-----------------------PISKDTLENFVEKADDLAVVAFF 155          

HSP 2 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 41/104 (39.42%), Postives = 55/104 (52.88%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKP--PVDYQGARDVKPIAEFV 449
            +V L  +NF   V++    VLVEFYAPWCGHC+ L P +EK A          VA +DA E+        I GFPTI  F       PV Y+G R ++ ++ F+
Sbjct:  357 LVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDI---SVSISGFPTIMFFKANDKVNPVRYEGDRTLEDLSAFI 457          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_SHIFL (Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 37/100 (37.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ +++   A +YGIRG PT+ +F  G+      GA     + EF+
Sbjct:    5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 104          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_SALTY (Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 37/100 (37.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ +++   A +YGIRG PT+ +F  G+      GA     + EF+
Sbjct:    5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 104          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_SALTI (Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 37/100 (37.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ +++   A +YGIRG PT+ +F  G+      GA     + EF+
Sbjct:    5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 104          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_ECOLI (Thioredoxin-1 OS=Escherichia coli (strain K12) GN=trxA PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 37/100 (37.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ +++   A +YGIRG PT+ +F  G+      GA     + EF+
Sbjct:    5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 104          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_ECOL6 (Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 37/100 (37.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ +++   A +YGIRG PT+ +F  G+      GA     + EF+
Sbjct:    5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 104          
The following BLAST results are available for this feature:
BLAST of FC921237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
PDI_MEDSA3.065e-1538.81Protein disulfide-isomerase OS=Medicago sativa GN=... [more]
PDIA2_PONAB4.003e-1542.71Protein disulfide-isomerase A2 OS=Pongo abelii GN=... [more]
TMX3_MOUSE6.829e-1541.30Protein disulfide-isomerase TMX3 OS=Mus musculus G... [more]
TMX3_HUMAN6.829e-1541.30Protein disulfide-isomerase TMX3 OS=Homo sapiens G... [more]
PDI1_SCHPO6.829e-1530.82Putative protein disulfide-isomerase C1F5.02 OS=Sc... [more]
THIO_SHIFL1.521e-1437.00Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV... [more]
THIO_SALTY1.521e-1437.00Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE... [more]
THIO_SALTI1.521e-1437.00Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=... [more]
THIO_ECOLI1.521e-1437.00Thioredoxin-1 OS=Escherichia coli (strain K12) GN=... [more]
THIO_ECOL61.521e-1437.00Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32102G03EF RVDevelopN Citrus clementina cDNA clone C32102G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921237 ID=FC921237; Name=FC921237; organism=Citrus clementina; type=EST; length=676bp
GGAGTCTGGGAAGAAAGAAAAAGAAAATTAAAAATTTCTCGAGAAAGTGA
CGGAAAATGCGCAGATCACAATTGCTTGTCATTTTAACAATCTTCTCATT
CTTTGCGCGCTTCAATCTCAGTGATGCATTGTATGGTTCATAATCACCAG
TAGTTCAGCTCACTCCTAACAACTTCAAGTCCAAGGTCCTGAATGCCAAT
GGAGTTGTGTTGGTTGAGTTCTATGCACCTTGGTGTGGTCATTGTCAAGC
TTTGACACCCATATGGGAGAAAGCAGCTACTGTCTTGAAAGGTGTCGCTA
CTGTGGCAGCTCTTGATGCCAATGAACACCAGTCCCTTGCTCAGGAATAT
GGGATCAGAGGATTCCCAACCATAAAGATGTTTGTACCAGGGAAGCCTCC
AGTAGATTACCAAGGAGCTAGGGATGTCAAACCTATTGCAGAATTTGTAC
TTCAACAGATAAAGGCACTATTGAAGGAACGTCTAAGTGGGAAAGCAACT
GGAGGATCAAGTGATAAATCTAAATCTGATTCTAATGAGTCTATAGAATT
GAATTCTAGCAATTTTGATGAGTTGGTGCTCAAAAGCAAAGATCTTTGGA
TTGTGGAGTTTTTTGCACCTTGGTGTGGACACTGCAAAAAGCTGGCTCCT
GAGTGGAAAGAAGCTGCTAATAACTT
back to top