FC921237

Overview
NameFC921237
Unique NameFC921237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_ECO57 (Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 37/100 (37.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A   +G  TVA L+ +++   A +YGIRG PT+ +F  G+      GA     + EF+
Sbjct:    5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 104          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: TXND_THEPA (Thioredoxin domain-containing protein OS=Theileria parva GN=TP02_0602 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 40/109 (36.70%), Postives = 57/109 (52.29%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVV----LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFVLQQIK 464
            +V L   NF+     + G       V+FYAPWC HC+ + P WE  A  LKG   VA +D   + +L + + IRG+PT+ +F  GK      G R V+ ++EF L   K
Sbjct:   32 LVLLNEKNFEKLTQASTGATTGTWFVKFYAPWCSHCRKMAPAWESLAKALKGQVNVADVDVTRNLNLGKRFQIRGYPTLLLFHKGKMYQYEGGERTVEKLSEFALGDFK 140          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: TMX3_PONAB (Protein disulfide-isomerase TMX3 OS=Pongo abelii GN=TMX3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  210 LVEFYAPWCGHCQALTPIWEKAATVLKGVAT---VAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFVLQQIKALLK 476
            LV+FYAPWCGHC+ L PIW +    +K + +   V  +DA  + S+A E+G+RG+PTIK+ + G    +++G R    I EF  +   AL++
Sbjct:   45 LVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKL-LKGDLAYNHRGPRTKDDIIEFAHRVSGALIR 135          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDI2_ARATH (Protein disulfide-isomerase 2 OS=Arabidopsis thaliana GN=At1g77510 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 44/109 (40.37%), Postives = 68/109 (62.39%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANE--HQSLAQEYGIRGFPTIKMF-VPGKPPVDYQGARDVKPIAEFVLQQ 458
            V+ L  +NF ++ ++ +  ++VEFYAPWCGHCQ L P +EKAA+ L        +A +DA+E  ++  A EY I+GFPT+K+    GK   DY G R+ + I  ++ +Q
Sbjct:   31 VLTLDHSNF-TETISKHDFIVVEFYAPWCGHCQKLAPEYEKAASELSSHNPPLALAKIDASEEANKEFANEYKIQGFPTLKILRNGGKSVQDYNGPREAEGIVTYLKKQ 138          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDI1_ARATH (Probable protein disulfide-isomerase 1 OS=Arabidopsis thaliana GN=At1g21750 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANE--HQSLAQEYGIRGFPTIKMF-VPGKPPVDYQGARDVKPIAEFVLQQ 458
            V+ L   NF +  +N +  ++VEFYAPWCGHC+ L P +EKAA+ L        +A +DA+E  ++  A +Y ++GFPTIK+F   GK   +Y G R+ + I  ++ +Q
Sbjct:   32 VLTLDHTNF-TDTINKHDFIVVEFYAPWCGHCKQLAPEYEKAASALSSNVPPVVLAKIDASEETNREFATQYEVQGFPTIKIFRNGGKAVQEYNGPREAEGIVTYLKKQ 139          

HSP 2 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 3
Query:  147 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV--AALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            PV  +  ++    VLN+   VL+EFYAPWCGHCQ L PI ++ A   +  ++V  A LDA  +      + ++GFPTI         V Y+G R  +    FV
Sbjct:  375 PVKVVVSDSLDDIVLNSGKNVLLEFYAPWCGHCQKLAPILDEVAVSYQSDSSVVIAKLDATANDFPKDTFDVKGFPTIYFKSASGNVVVYEGDRTKEDFISFV 477          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: TMX3_XENLA (Protein disulfide-isomerase TMX3 OS=Xenopus laevis GN=tmx3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  144 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT---VAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEF 446
            S +V+   ++FK      + + LV+FYAPWCGHC+ L P+W +    ++   +   V  +DA  + S+A E+G+RGFPTIK  + G    +Y+G R  + I EF
Sbjct:   25 SALVEDLDDSFKEN--RKDDIWLVDFYAPWCGHCKKLEPVWNEVGIEIRTSGSPIRVGKIDATVYSSIASEFGVRGFPTIKA-LKGDMAYNYRGPRTKEDIVEF 125          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDI_MAIZE (Protein disulfide-isomerase OS=Zea mays GN=PDI PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.288e-13
Identity = 50/141 (35.46%), Postives = 76/141 (53.90%), Query Frame = 3
Query:   75 LVILTIFSFFARFNLSDALYGS*SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK---GVATVAALDANEHQS--LAQEYGIRGFPTIKMFVP-GKPPVDYQGARDVKPIAEFVLQQIKALLKE 479
            L++    +  AR     A       V+ L  ++F   V   +  ++VEFYAPWCGHC+ L P +E AA  L        +A +DANE ++  LA +Y I+GFPTIK+F   GK   +Y+G R+   I +++ +Q+    KE
Sbjct:   11 LLLALAVALSARAEEEPAAAAEGEAVLTLDVDSFDEAVAK-HPFMVVEFYAPWCGHCKKLAPEYENAAKALSKHDPPIVLAKVDANEEKNRPLATKYEIQGFPTIKIFRDRGKNIQEYKGPREADGIVDYLKKQVGPASKE 150          

HSP 2 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 35/103 (33.98%), Postives = 54/103 (52.43%), Query Frame = 3
Query:  147 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            PV  +  +N    V  +   VL+EFYAPWCGHC+ L PI ++AAT L+      +A +DA  +  +  E+ ++G+PT+    P      Y   R    I +F+
Sbjct:  379 PVKVVVADNVHDFVFKSGKNVLIEFYAPWCGHCKKLAPILDEAATTLQSDEEVVIAKMDATAN-DVPSEFDVQGYPTLYFVTPSGKVTSYDSGRTADDIVDFI 480          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: SEP2_EMIHU (Protein disulfide-isomerase-like protein EhSep2 OS=Emiliania huxleyi GN=SEP2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 37/116 (31.90%), Postives = 63/116 (54.31%), Query Frame = 3
Query:  126 ALYGS*SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN---EHQSLAQEYGIRGFPTIKMF-VPGKPPVDYQGARDVKPIAEFVLQQI 461
            A  G+ +  ++LTP+NF   VL +     ++F APW GHC+ + P W+  A+  +    V   D +     + L ++YG+RG+PTIK F  P +   DY+G R +  + +F   ++
Sbjct:   11 AAAGASAGAIELTPDNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENEL 126          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: PDI2_DICDI (Protein disulfide-isomerase 2 OS=Dictyostelium discoideum GN=pdi2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 38/104 (36.54%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  159 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFVLQQIK 464
            L  +NF + V + + V LV FYAPWCGHC+ L P++E+AA  L       +A +D  +H+ L ++  ++G+PT+ +F  GK    Y+G R  K I + + +++K
Sbjct:   46 LDSDNFHNSV-SEHDVTLVMFYAPWCGHCKTLKPLYEEAAKQLSANKKIAIAKVDCTQHEQLCKQNKVQGYPTLVVFKNGKAE-PYEGDRTTKSIVQTLEEELK 147          

HSP 2 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 3
Query:  144 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYGIRGFPTIKMFVPG--KPPVDYQGAR-DVKPIAEFVLQQIKALLKERLSGKAT 500
            +PV       FK  VL++   VLVEFYAPWCGHC+ L PI++K    LK V +V+ +  + +   +  +  IRG+PTI +F     + P+ Y+G R D     EF+  Q  A ++ +L    T
Sbjct:  376 APVKVAVGTTFKKLVLDSPKDVLVEFYAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDKENPISYEGQRNDHMNFVEFI--QDNAAIEFKLPSSQT 496          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_PSEAE (Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13
Identity = 34/100 (34.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            +V +T  +F+  VL A+G VLV+++A WCG C+ + P+ ++ A   +G   V  L+ +E+Q    +YG+RG PT+ +F  G       GA     +A F+
Sbjct:    5 IVNVTDASFEQDVLKADGPVLVDYWAEWCGPCKMIAPVLDEVARDYQGKLKVCKLNIDENQDTPPKYGVRGIPTLMLFKDGNVEATKVGALSKSQLAAFL 104          
The following BLAST results are available for this feature:
BLAST of FC921237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
THIO_ECO571.521e-1437.00Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA ... [more]
TXND_THEPA1.987e-1436.70Thioredoxin domain-containing protein OS=Theileria... [more]
TMX3_PONAB2.595e-1440.22Protein disulfide-isomerase TMX3 OS=Pongo abelii G... [more]
PDI2_ARATH2.595e-1440.37Protein disulfide-isomerase 2 OS=Arabidopsis thali... [more]
PDI1_ARATH2.595e-1439.45Probable protein disulfide-isomerase 1 OS=Arabidop... [more]
TMX3_XENLA9.860e-1437.50Protein disulfide-isomerase TMX3 OS=Xenopus laevis... [more]
PDI_MAIZE1.288e-1335.46Protein disulfide-isomerase OS=Zea mays GN=PDI PE=... [more]
SEP2_EMIHU1.682e-1331.90Protein disulfide-isomerase-like protein EhSep2 OS... [more]
PDI2_DICDI2.869e-1336.54Protein disulfide-isomerase 2 OS=Dictyostelium dis... [more]
THIO_PSEAE6.391e-1334.00Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC32102G03EF RVDevelopN Citrus clementina cDNA clone C32102G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921237 ID=FC921237; Name=FC921237; organism=Citrus clementina; type=EST; length=676bp
GGAGTCTGGGAAGAAAGAAAAAGAAAATTAAAAATTTCTCGAGAAAGTGA
CGGAAAATGCGCAGATCACAATTGCTTGTCATTTTAACAATCTTCTCATT
CTTTGCGCGCTTCAATCTCAGTGATGCATTGTATGGTTCATAATCACCAG
TAGTTCAGCTCACTCCTAACAACTTCAAGTCCAAGGTCCTGAATGCCAAT
GGAGTTGTGTTGGTTGAGTTCTATGCACCTTGGTGTGGTCATTGTCAAGC
TTTGACACCCATATGGGAGAAAGCAGCTACTGTCTTGAAAGGTGTCGCTA
CTGTGGCAGCTCTTGATGCCAATGAACACCAGTCCCTTGCTCAGGAATAT
GGGATCAGAGGATTCCCAACCATAAAGATGTTTGTACCAGGGAAGCCTCC
AGTAGATTACCAAGGAGCTAGGGATGTCAAACCTATTGCAGAATTTGTAC
TTCAACAGATAAAGGCACTATTGAAGGAACGTCTAAGTGGGAAAGCAACT
GGAGGATCAAGTGATAAATCTAAATCTGATTCTAATGAGTCTATAGAATT
GAATTCTAGCAATTTTGATGAGTTGGTGCTCAAAAGCAAAGATCTTTGGA
TTGTGGAGTTTTTTGCACCTTGGTGTGGACACTGCAAAAAGCTGGCTCCT
GAGTGGAAAGAAGCTGCTAATAACTT
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