FC921237

Overview
NameFC921237
Unique NameFC921237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_STRAU (Thioredoxin (Fragment) OS=Streptomyces aureofaciens GN=trxA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = 3
Query:  153 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            V++T   FKS VL ++  VLV F  PWCG C+ + P+ ++ A   +G   VA ++ +E+  LA +YG+R  PT  MF  G+   +  GA     +A F+
Sbjct:    4 VKVTNATFKSDVLESDKPVLVHFEGPWCGPCKMVAPVLDEIANEYEGKVKVAKVNTDENPQLASQYGVRSIPTRLMFKGGEVAANMVGAAPKTRLAAFL 102          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_RICFE (Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 35/101 (34.65%), Postives = 61/101 (60.40%), Query Frame = 3
Query:  159 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFVLQQI 461
            +T ++FK +VL ++  VLV+F+A WCG C+ LTPI ++ +  LKG   V  ++ +E+ ++  EYGIR  PTI +F  G+      G +    + +++ + I
Sbjct:    5 VTDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELKGKVKVLKMNIDENPNIPSEYGIRSIPTIMLFKNGEQKDTKIGLQQKNSLLDWINKSI 105          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 32/99 (32.32%), Postives = 61/99 (61.62%), Query Frame = 3
Query:  153 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            V++  +NF+S VL ++  V+V+F+A WCG C+ + P  ++ AT + G   +A ++ +E+  LA ++G+R  PT+ MF  G+   +  GA     +A+++
Sbjct:    3 VKVDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGELAANMVGAAPKSRLADWI 101          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_PASMU (Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 34/104 (32.69%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFVLQQI 461
            V+  T   F + V+N++  VL++F+APWCG C+ ++PI ++ A    G   V  ++ +E+Q+   + G+R  PT+ +F  GK      GA     +A F+ Q I
Sbjct:    3 VLHSTDATFTADVVNSDVPVLLDFWAPWCGPCRMISPILDEIAAEFSGKVKVVKINIDENQATPAQLGVRSIPTLVLFKNGKAVATQVGALPKNQLANFINQNI 106          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 36/102 (35.29%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  156 QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFVLQQI 461
            + T  NF++++L+++  VLV+F+A WCG C  L P+ E+ A   +G A +A L+ +E+ ++A +YGIR  PT+ +   GK      GA     IA+ + + I
Sbjct:    6 EATDKNFQTEILDSDKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEHI 107          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: BS2_TRYBB (Bloodstream-specific protein 2 OS=Trypanosoma brucei brucei GN=BS2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 37/99 (37.37%), Postives = 53/99 (53.54%), Query Frame = 3
Query:  153 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFV 449
            ++LT  NF   +  +  + LV+FY   CG+CQ L P WEKAA      A +  +D +    LA  + IRG+PTI +F  GK    Y GAR    I +++
Sbjct:   22 LKLTKENFNETIAKSE-IFLVKFYVDTCGYCQMLAPEWEKAANETIDNALMGEVDCHSQPELAANFSIRGYPTIILFRNGKEAEHYGGARTKDDIIKYI 119          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 29/81 (35.80%), Postives = 54/81 (66.67%), Query Frame = 3
Query:  153 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGK 395
            +Q+T  +F+ +V+N+  +VLV+F+APWCG C+ ++P+ ++ A        +  ++ +E+ S++ EYGIR  PT+ +F  GK
Sbjct:    5 IQVTDFSFEKEVVNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGK 85          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  156 QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAE 443
            + T  NF++++LN++ V LV+F+A WCG C  L P+ E+ A   +G A +A L+ +E+ + A +YGIR  PT+ +   GK      GA     IA+
Sbjct:    7 EATDQNFQAEILNSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAK 102          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 31/84 (36.90%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  144 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGK 395
            S   Q+T + FK +VL+++  VLV+F+APWCG C+ + P+ ++ A   +G   V  ++ +E+  +A +YGIR  PT+ +F  G+
Sbjct:    2 SAAAQVTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQ 85          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 31/84 (36.90%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  144 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGK 395
            S   Q+T + FK +VL+++  VLV+F+APWCG C+ + P+ ++ A   +G   V  ++ +E+  +A +YGIR  PT+ +F  G+
Sbjct:    2 SAAAQVTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQ 85          
The following BLAST results are available for this feature:
BLAST of FC921237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
THIO_STRAU2.429e-1236.36Thioredoxin (Fragment) OS=Streptomyces aureofacien... [more]
THIO_RICFE2.429e-1234.65Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2[more]
THIO1_CORNE2.429e-1232.32Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]
THIO_PASMU3.172e-1232.69Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 ... [more]
THIO_CHLLT3.172e-1235.29Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
BS2_TRYBB3.172e-1237.37Bloodstream-specific protein 2 OS=Trypanosoma bruc... [more]
THIO_CYACA4.143e-1235.80Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO2_CHLTE4.143e-1237.50Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]
THIO1_ANASP4.143e-1236.90Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO4.143e-1236.90Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]

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Properties
Property NameValue
Genbank descriptionC32102G03EF RVDevelopN Citrus clementina cDNA clone C32102G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921237 ID=FC921237; Name=FC921237; organism=Citrus clementina; type=EST; length=676bp
GGAGTCTGGGAAGAAAGAAAAAGAAAATTAAAAATTTCTCGAGAAAGTGA
CGGAAAATGCGCAGATCACAATTGCTTGTCATTTTAACAATCTTCTCATT
CTTTGCGCGCTTCAATCTCAGTGATGCATTGTATGGTTCATAATCACCAG
TAGTTCAGCTCACTCCTAACAACTTCAAGTCCAAGGTCCTGAATGCCAAT
GGAGTTGTGTTGGTTGAGTTCTATGCACCTTGGTGTGGTCATTGTCAAGC
TTTGACACCCATATGGGAGAAAGCAGCTACTGTCTTGAAAGGTGTCGCTA
CTGTGGCAGCTCTTGATGCCAATGAACACCAGTCCCTTGCTCAGGAATAT
GGGATCAGAGGATTCCCAACCATAAAGATGTTTGTACCAGGGAAGCCTCC
AGTAGATTACCAAGGAGCTAGGGATGTCAAACCTATTGCAGAATTTGTAC
TTCAACAGATAAAGGCACTATTGAAGGAACGTCTAAGTGGGAAAGCAACT
GGAGGATCAAGTGATAAATCTAAATCTGATTCTAATGAGTCTATAGAATT
GAATTCTAGCAATTTTGATGAGTTGGTGCTCAAAAGCAAAGATCTTTGGA
TTGTGGAGTTTTTTGCACCTTGGTGTGGACACTGCAAAAAGCTGGCTCCT
GAGTGGAAAGAAGCTGCTAATAACTT
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