FC921237

Overview
NameFC921237
Unique NameFC921237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: GSBP_CHICK (Dolichyl-diphosphooligosaccharide--protein glycotransferase OS=Gallus gallus PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 3
Query:  189 LNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT---VAALDANEHQSLAQEYGIRGFPTIKMFVPG--KPPVDYQGARDVKPIAEFV 449
            L A+  + VEFYAP CGHC+AL P + KA   LK   +    A ++A E   LAQ+YG+R +PTIK F  G    P +Y   R+   I  ++
Sbjct:   37 LAAHSYLAVEFYAPLCGHCKALAPDYAKAGGKLKAEGSEIKAAKVEATEESDLAQQYGVRAYPTIKFFKNGDTASPKEYTAGREADDIVNWL 128          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.411e-12
Identity = 31/82 (37.80%), Postives = 54/82 (65.85%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGK 395
            V Q+T  +FK +V+N N  VLV+F+APWCG C+ ++P+ ++ A   +    V  ++ +++ ++A EYGIR  PT+ +F  G+
Sbjct:    3 VSQVTDASFKQEVINNNLPVLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGE 84          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: ERP44_MOUSE (Endoplasmic reticulum resident protein ERp44 OS=Mus musculus GN=Erp44 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.411e-12
Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 3
Query:   57 MRRSQLLVILTIFSFFARFNLSDALYGS*SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVL------KGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPG-KPPVDYQGARDVKPIAEFVLQQ 458
            +R S LL++ +IF+               + +  L   N   ++LN   V LV FYA WC   Q L PI+E+A+ V+      K     A +D ++H  +AQ Y I  +PT+K+F  G     +Y+G R VK +A+++ QQ
Sbjct:   12 LRCSLLLLVTSIFTPIT------------AEIASLDSENI-DEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEYPDKNQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 139          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: ERP44_BOVIN (Endoplasmic reticulum resident protein ERp44 OS=Bos taurus GN=ERP44 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.411e-12
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK------GVATVAALDANEHQSLAQEYGIRGFPTIKMFVPG-KPPVDYQGARDVKPIAEFVLQQ 458
            ++ L   N    +LN   V LV FYA WC   Q L PI+E+A+ V+K           A +D ++H  +AQ Y I  +PT+K+F  G     +Y+G R VK +A+++ QQ
Sbjct:   31 IISLDTENIDD-ILNNADVALVNFYADWCRFSQMLHPIFEEASNVIKEEYPNANQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 139          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_HELPY (Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 37/115 (32.17%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  144 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFVLQQIKALLKERLS 488
            S  ++LT  NF+S +    GV LV+F+APWCG C+ L+P+ ++ A+  +G A +  ++ +E + L+ ++GIR  PT+               +D + + + V  Q K  LKE+L+
Sbjct:    2 SHYIELTEENFESTI--KKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLF------------TKDGEVVHQLVGVQTKVALKEQLN 102          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 37/115 (32.17%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  144 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFVLQQIKALLKERLS 488
            S  ++LT  NF+S +    GV LV+F+APWCG C+ L+P+ ++ A+  +G A +  ++ +E + L+ ++GIR  PT+               +D + + + V  Q K  LKE+L+
Sbjct:    2 SHYIELTEENFESTI--KKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLF------------TKDGEVVHQLVGVQTKVALKEQLN 102          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: ERP44_HUMAN (Endoplasmic reticulum resident protein ERp44 OS=Homo sapiens GN=ERP44 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  183 KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK------GVATVAALDANEHQSLAQEYGIRGFPTIKMFVPG-KPPVDYQGARDVKPIAEFVLQQ 458
            ++LN   V LV FYA WC   Q L PI+E+A+ V+K           A +D ++H  +AQ Y I  +PT+K+F  G     +Y+G R VK +A+++ QQ
Sbjct:   41 EILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 139          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO2_CORNE (Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 34/104 (32.69%), Postives = 53/104 (50.96%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAEFVLQQI 461
            +V  T  NF++ VL+A   VLV+F+A WC  C+A+ P+ E+ +    G   +  +D    +  A +Y IR  P + MF  G+      GA     +A F+ Q I
Sbjct:    5 IVNTTDENFQADVLDAETPVLVDFWAGWCAPCKAIAPVLEELSNEYAGKVKIVKVDVTSCEDTAVKYNIRNIPALLMFKDGEVVAQQVGAAPRSKLAAFIDQNI 108          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 30/82 (36.59%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGK 395
            V Q+T  +FK +V+N +  VLV+F+APWCG C+ ++P+ +  A   +    V  ++ +++ ++A EYGIR  PT+ +F  G+
Sbjct:    3 VSQVTDASFKQEVINNDLPVLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGE 84          
BLAST of FC921237 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  150 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKMFVPGKPPVDYQGARDVKPIAE 443
            +V++T  +F SKV   +GV LV+F+A WCG C+ + P+ E+ A   +G A +  LD +E+ S A +Y +   PT+ +F  G+P     G +  + +AE
Sbjct:    3 IVKVTDADFDSKV--ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAE 98          
The following BLAST results are available for this feature:
BLAST of FC921237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
GSBP_CHICK4.143e-1241.30Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
THIO_PORYE5.411e-1237.80Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
ERP44_MOUSE5.411e-1232.62Endoplasmic reticulum resident protein ERp44 OS=Mu... [more]
ERP44_BOVIN5.411e-1236.36Endoplasmic reticulum resident protein ERp44 OS=Bo... [more]
THIO_HELPY7.066e-1232.17Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV... [more]
THIO_HELPJ7.066e-1232.17Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
ERP44_HUMAN7.066e-1238.38Endoplasmic reticulum resident protein ERp44 OS=Ho... [more]
THIO2_CORNE2.685e-1132.69Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 ... [more]
THIO_PORPU3.507e-1136.59Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
THIO_STAAW4.580e-1135.71Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]

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Properties
Property NameValue
Genbank descriptionC32102G03EF RVDevelopN Citrus clementina cDNA clone C32102G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921237 ID=FC921237; Name=FC921237; organism=Citrus clementina; type=EST; length=676bp
GGAGTCTGGGAAGAAAGAAAAAGAAAATTAAAAATTTCTCGAGAAAGTGA
CGGAAAATGCGCAGATCACAATTGCTTGTCATTTTAACAATCTTCTCATT
CTTTGCGCGCTTCAATCTCAGTGATGCATTGTATGGTTCATAATCACCAG
TAGTTCAGCTCACTCCTAACAACTTCAAGTCCAAGGTCCTGAATGCCAAT
GGAGTTGTGTTGGTTGAGTTCTATGCACCTTGGTGTGGTCATTGTCAAGC
TTTGACACCCATATGGGAGAAAGCAGCTACTGTCTTGAAAGGTGTCGCTA
CTGTGGCAGCTCTTGATGCCAATGAACACCAGTCCCTTGCTCAGGAATAT
GGGATCAGAGGATTCCCAACCATAAAGATGTTTGTACCAGGGAAGCCTCC
AGTAGATTACCAAGGAGCTAGGGATGTCAAACCTATTGCAGAATTTGTAC
TTCAACAGATAAAGGCACTATTGAAGGAACGTCTAAGTGGGAAAGCAACT
GGAGGATCAAGTGATAAATCTAAATCTGATTCTAATGAGTCTATAGAATT
GAATTCTAGCAATTTTGATGAGTTGGTGCTCAAAAGCAAAGATCTTTGGA
TTGTGGAGTTTTTTGCACCTTGGTGTGGACACTGCAAAAAGCTGGCTCCT
GAGTGGAAAGAAGCTGCTAATAACTT
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