FC921239

Overview
NameFC921239
Unique NameFC921239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC921239 vs. ExPASy Swiss-Prot
Match: ALG1_KLULA (Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Kluyveromyces lactis GN=ALG1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.761e-13
Identity = 52/196 (26.53%), Postives = 87/196 (44.39%), Query Frame = 3 
Query:   33 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRR--SHFVSIYRWIEKYYGKMANGSLCVAQAMQHELAQNWGI---KATVLYDQPPEFFHPTSLEEKHELFCR---LNKNLHQPLGVQDCVSNAGMEGQKADETIFTSLAGTDVFLKPNRPAVVVSGTSWTPDEDFGILLEAALMYD 596
            K+ + D  L+QNPP++P L       +  R+  I+DWHN GYT+L +    +     V +   IE  + K AN  L V +AM+  L + +GI   K  VLYD+P + F P    +  E   +   + K + +   +                               ++  + V+ TS+TPDED  +L+ +  +Y+
Sbjct:  124 KLRAVDYILLQNPPTIPILPIAVVVKTFSRAKLIIDWHNLGYTILQMKFKDQFLHPLVLLAYLIEWIFAKFANYHLTVTKAMKTYLVEKFGIDGKKIAVLYDRPGKQFSPLKEADDREALLKQEFIAKYIPKEFDI-------------------------------SKDKIFVTSTSFTPDEDISVLIGSFKIYE 288
The following BLAST results are available for this feature:
BLAST of FC921239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ALG1_KLULA4.761e-1326.53Chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]

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Properties
Property NameValue
Genbank descriptionC32102G05EF RVDevelopN Citrus clementina cDNA clone C32102G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921239 ID=FC921239; Name=FC921239; organism=Citrus clementina; type=EST; length=667bp
CAGTTTTTCATGCTTCTTTGGTTTCTTTGCGTAAAATTGCATCTCCTGAT
GTATTTTTGGTGCAGAATCCCCCTTCTGTTCCAACCTTAGTGGCTGTAAA
ATGGGCAAGTTCACTTAGGCGATCGGCATTTATCGTTGATTGGCATAATT
TTGGATATACGTTGCTCAGTTTGTCCCTTGGAAGAAGAAGTCACTTTGTT
TCAATATACCGATGGATTGAGAAGTATTATGGGAAGATGGCAAATGGTTC
TCTTTGTGTAGCACAAGCAATGCAACATGAATTGGCTCAAAACTGGGGAA
TTAAAGCCACTGTATTGTATGATCAGCCGCCTGAATTCTTTCATCCTACA
TCACTTGAGGAGAAGCATGAGTTGTTCTGTAGATTGAACAAGAACCTACA
TCAGCCTCTGGGTGTTCAAGATTGTGTCAGTAATGCAGGAATGGAAGGCC
AGAAGGCAGATGAGACTATATTCACTAGTCTGGCTGGCACTGATGTTTTC
TTGAAGCCAAACAGACCTGCCGTTGTTGTAAGCGGCACAAGTTGGACTCC
AGATGAAGATTTTGGTATTCTTTTGGAAGCAGCACTAATGTATGATAGAC
GTGTTGCTGCAATACTGAATGAAGATGAATTCACTAATGAAGAGGTTTTT
TTGAAAGGAATTTCTGA
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