FC921241

Overview
NameFC921241
Unique NameFC921241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921241 vs. ExPASy Swiss-Prot
Match: GDL1_CARPA (GDSL esterase/lipase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 62/200 (31.00%), Postives = 91/200 (45.50%), Query Frame = 2
Query:  110 IITFGDSAVDVGNNNYLATLFKANYPPYGR--DFINHQPTGRFCNGKLATDFTADTLGFKTYAPAYLSPQATGKNLLIGANFASAGS---GYDDRTSYLNHAISLTQQLQYYREYQSKLAKVAGSKQSASIIKDAIYIVGSGSGDFLQNYYVNPLLNKV-YTPEQYSSMLVNIFSSFIKNMYGLGARKFGVTSLPPLGCL 691
            +  FGDS  D GN  +LAT   + + PYG   DF    P GR+ +G++  DF A+ LG   + P  L   A   N   G  FA+A +   G   +T      ++L  Q++ + + +S        K         IY+   G+ D+L   Y N  LN      E + S ++      +  +YGLG RKF   +L PLGCL
Sbjct:   29 LFIFGDSLYDNGNKPFLATDVPSTFWPYGLSIDF----PNGRWSDGRIVPDFIAEFLGIP-FPPPVLDRSA---NFSSGVTFATADATILGTPPQT------LTLGDQVKAFAQIKSTWTDAQRQK--------GIYMFYIGANDYLN--YTNANLNATAQQQEAFVSQVIAKLKDQLLAIYGLGGRKFAFQNLAPLGCL 204          
BLAST of FC921241 vs. ExPASy Swiss-Prot
Match: GDL12_ARATH (GDSL esterase/lipase At1g28660 OS=Arabidopsis thaliana GN=At1g28660 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 60/205 (29.27%), Postives = 94/205 (45.85%), Query Frame = 2
Query:  107 AIITFGDSAVDVGNNNYLAT---LFKANYPPYGRDFINHQPTGRFCNGKLATDFTADTLGFKTYAPAYLSPQATGKNLLIGANFASAGSGYDDRTSYLNHAI-------SLTQQLQYYREYQSKLAKVAGSKQSASIIKDAIYIVGS-GSGDFLQNYYVNPLLNKVYTPEQYSSMLVNIFSSFIKNMYGLGARKFGVTSLPPLGC 688
            +II+FGDS  D GN  +L+    L +  + PYG  F  H P+GR  +G+L  DF A+ LG   Y P Y   Q    +   G NFA  G+   DR  ++   I       SL  QL  +++    L   + S+    ++ D++ ++G  G  DF         +N+     +   +++   SS I ++  LG + F V    P GC
Sbjct:   35 SIISFGDSIADTGNILHLSDVNHLPQTAFFPYGESFF-HPPSGRASDGRLIIDFIAEFLGL-PYVPPYFGSQ--NVSFEQGINFAVYGATALDRAYFVAKGIESDFTNVSLGVQLDIFKQILPNLC-ASSSRDCREMLGDSLILMGEIGGNDFFYPSSEGKSINET----KLQDLIIKAISSAIVDLIALGGKTFLVPGGFPAGC 230          
BLAST of FC921241 vs. ExPASy Swiss-Prot
Match: GDL50_ARATH (GDSL esterase/lipase At3g09930 OS=Arabidopsis thaliana GN=At3g09930 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 56/195 (28.72%), Postives = 90/195 (46.15%), Query Frame = 2
Query:  110 IITFGDSAVDVGN-NNYLATLFKANYPPYGRDFINHQPTGRFCNGKLATDFTADTLGFKTYAPAYLSPQATGKNLLIGANFASAGSGYDDRTSYLNHAISLTQQLQYYREYQSKLAKVAGSKQSASIIKDAIYIVGSGSGDFLQNYYVNPLLNKVYTPEQYSSMLVNIFSSFIKNMYGLGARKFGVTSLPPLGCL 691
            +  FGDS  D GN    L+  +K    PYG  F   +P+GRF +G++ATDF A  LG K+  P      A  + LL G N+A  G+G        N   ++T Q+ Y++         AG+  S S +  ++ +V     D+     +   L ++     +   +V+  +     ++ LG  K  + S+ PLGCL
Sbjct:   40 LFVFGDSYADTGNIRKSLSDSWKI---PYGITF-PQKPSGRFSDGRVATDFLARYLGIKSPIPYTWKDYAGKERLLYGMNYAYGGTGVFKTKD--NPLPNMTTQIDYFQR-----VLAAGNIYSPSDLPSSLALVSVAGNDYATFLALKRPLTEL---PAFMKQVVDQIAVNAMRIHKLGVNKIVIPSMQPLGCL 220          
BLAST of FC921241 vs. ExPASy Swiss-Prot
Match: GDL71_ARATH (GDSL esterase/lipase At5g03610 OS=Arabidopsis thaliana GN=At5g03610 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 54/196 (27.55%), Postives = 91/196 (46.43%), Query Frame = 2
Query:  110 IITFGDSAVDVGNNNYLATLFKANYP-PYGRDFINHQPTGRFCNGKLATDFTADTLGFKTYAPAYLSPQATGKNLLIGANFASAGSG-YDDRTSYLNHAISLTQQLQYYREYQSKLAKVAGSKQSASIIKDAIYIVGSGSGDFLQNYYVNPLLNKVYTPEQYSSMLVNIFSSFIKNMYGLGARKFGVTSLPPLGCL 691
            +  FGDS  D GN   +   F +++  PYG  F   +P GRF +G++ATDF A  +G K+  P +    A  K L  G NFA  G+G ++ +T   N    +T Q+  ++   +      G       +  ++ +V     D+     +N   ++      +   +V+     ++ ++ LG +K  V SL PLGCL
Sbjct:   44 LFVFGDSYADTGN---IKKAFSSSWKFPYGITFPG-KPAGRFSDGRVATDFLAKFVGIKSPIPYFWKDYAGKKRLQYGMNFAYGGTGVFNTQTPLPN----MTTQIDIFQNILT-----TGDIYYPPELTSSVALVSVAGNDYSNFIALNRPASEF---PAFIKQVVDQTEVNLRRIHALGVKKIAVPSLQPLGCL 223          
BLAST of FC921241 vs. ExPASy Swiss-Prot
Match: GDL2_ARATH (GDSL esterase/lipase At1g09390 OS=Arabidopsis thaliana GN=At1g09390 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 62/207 (29.95%), Postives = 94/207 (45.41%), Query Frame = 2
Query:  104 PAIITFGDSAVDVGNNNYLATLFKANYPPYGRDFINHQPTGRFCNGKLATDFTADTLGFKTYAPAYLSPQATGKNLLIGANFASAGSGYDDRTSYLNHAISLT-QQLQYYREYQSKLAKVAGSKQSASI----IKDAIYIVGSGSGDFLQNYYVNPLLNKVYTPEQYSSMLVNIFS---SFIKNMYGLGARKFGVTSLPPLGCLQQQ 700
            P I  FGDS  D G    +A L  +   P GR F     TGR  +G+L  DF   +L      P YL     G     GANFA  GS    R  Y+  A+++   Q  +++    +LA ++   +   I     ++A+Y++  G  D   ++      +K  +  +   ++ N+ S   S IK +Y  G RKF V +  PLGCL Q+
Sbjct:   36 PVIFNFGDSNSDTGG--LVAGLGYSIGLPNGRSFFQRS-TGRLSDGRLVIDFLCQSLNTSLLNP-YLD-SLVGSKFQNGANFAIVGSSTLPR--YVPFALNIQLMQFLHFKSRALELASISDPLKEMMIGESGFRNALYMIDIGQNDIADSF------SKGLSYSRVVKLIPNVISEIKSAIKILYDEGGRKFWVHNTGPLGCLPQK 229          
BLAST of FC921241 vs. ExPASy Swiss-Prot
Match: GDL49_ARATH (GDSL esterase/lipase At3g05180 OS=Arabidopsis thaliana GN=At3g05180 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 54/208 (25.96%), Postives = 88/208 (42.31%), Query Frame = 2
Query:  104 PAIITFGDSAVDVGNNNYLATLFKANYPPYGRDFINHQPTGRFCNGKLATDFTADTLGFKTYAPAYLSPQATGKNLLIGANFASAGSGYDDRTSYLNHAISLTQQLQYYREYQSKLAKVAGSKQ-------SASIIKDAIYIVGSGSGDFLQNYYVNPLLNKVYTPEQYSSM---LVNIFSSFIKNMYGLGARKFGVTSLPPLGCLQQ 697
            PA+  FGDS  D G  +  + L     P Y   F     +GRFCNG+L  DF  + +  + Y   YL    + +    G NFA+A S      +          Q+  +  ++SK+ ++    +       S     + +Y+   G  D    +Y         T +Q  ++   +++IF   IK +Y  GAR + + +  PLGCL Q
Sbjct:   35 PAVFNFGDSNSDTGELS--SGLGFLPQPSYEITFFRSPTSGRFCNGRLIVDFLMEAID-RPYLRPYLD-SISRQTYRRGCNFAAAASTIQKANAASYSPFGFGVQVSQFITFKSKVLQLIQQDEELQRYLPSEYFFSNGLYMFDIGQNDIAGAFYTK-------TVDQVLALVPIILDIFQDGIKRLYAEGARNYWIHNTGPLGCLAQ 231          
BLAST of FC921241 vs. ExPASy Swiss-Prot
Match: LIP4_ARATH (GDSL esterase/lipase LIP-4 OS=Arabidopsis thaliana GN=LIP4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 61/209 (29.19%), Postives = 89/209 (42.58%), Query Frame = 2
Query:  104 PAIITFGDSAVDVGNNNYLATLFKANYP---PYGRDFINHQPTGRFCNGKLATDFTADTLGFKTYAPAYLSPQATGKNLLIGANFASAGSGYDDRTSYLNHAISLTQQLQYYREYQSKLAKVAGSKQSASII-------KDAIYIVGSGSGDFLQNYYVNPLLNKVYTPEQYSSMLVNIFSSFIKNMYGLGARKFGVTSLPPLGCLQQQ 700
            P I  FGDS  D G       +    YP   P GR F     TGR  +G+L  DF   +L      P   S   T      GANFA AGS     T   N   SL  Q++ +  ++S+  ++A S  S   +       K+A+Y++  G  D  +++      N      +    ++    S IK +Y  G R+F + +  PLGCL Q+
Sbjct:   39 PVIFNFGDSNSDTGG-----LVAGLGYPIGFPNGRLFFRRS-TGRLSDGRLLIDFLCQSLNTSLLRPYLDSLGRT--RFQNGANFAIAGSP----TLPKNVPFSLNIQVKQFSHFKSRSLELASSSNSLKGMFISNNGFKNALYMIDIGQNDIARSFARG---NSYSQTVKLIPQIITEIKSSIKRLYDEGGRRFWIHNTGPLGCLPQK 232          
BLAST of FC921241 vs. ExPASy Swiss-Prot
Match: GDL18_ARATH (GDSL esterase/lipase At1g54000 OS=Arabidopsis thaliana GN=At1g54000 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 52/198 (26.26%), Postives = 90/198 (45.45%), Query Frame = 2
Query:  101 VPAIITFGDSAVDVGNNNYLA-TLFKANYPPYGRDFINHQPTGRFCNGKLATDFTADTLGFKTYAPAYLSPQATGKNLLIGANFASAGSGYDDRTSYLNHAISLTQQLQYYREYQSKLAKVAGSKQSASIIKDAIYIVGSGSGDFLQNYYVNPLLNKVYTPEQYSSMLVNIFSSFIKNMYGLGARKFGVTSLPPLGCL 691
            V A+ TFGDS  D GN   L  TL    + PYG+      P G+F +G +  DF A  +         L P     N+  GA+FA  G+           +++L QQ++ + + ++       +  +   +  +++++  G+ D+L     NP  +     + + + + N   + I  +Y  GA KF + +L PLGCL
Sbjct:   34 VVALFTFGDSNFDAGNKQTLTKTLVAQGFWPYGKS--RDDPNGKFSDGLITPDFLAKFMKIPLAIAPALQPNV---NVSRGASFAVEGATLLGAPV---ESMTLNQQVKKFNQMKA-------ANWNDDFVAKSVFMIYIGANDYLNFTKNNPTAD-ASAQQAFVTSVTNKLKNDISALYSSGASKFVIQTLAPLGCL 215          
The following BLAST results are available for this feature:
BLAST of FC921241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
GDL1_CARPA5.947e-1231.00GDSL esterase/lipase OS=Carica papaya PE=1 SV=1[more]
GDL12_ARATH7.767e-1229.27GDSL esterase/lipase At1g28660 OS=Arabidopsis thal... [more]
GDL50_ARATH1.325e-1128.72GDSL esterase/lipase At3g09930 OS=Arabidopsis thal... [more]
GDL71_ARATH3.855e-1127.55GDSL esterase/lipase At5g03610 OS=Arabidopsis thal... [more]
GDL2_ARATH3.855e-1129.95GDSL esterase/lipase At1g09390 OS=Arabidopsis thal... [more]
GDL49_ARATH5.034e-1125.96GDSL esterase/lipase At3g05180 OS=Arabidopsis thal... [more]
LIP4_ARATH8.587e-1129.19GDSL esterase/lipase LIP-4 OS=Arabidopsis thaliana... [more]
GDL18_ARATH8.587e-1126.26GDSL esterase/lipase At1g54000 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC32102G07EF RVDevelopN Citrus clementina cDNA clone C32102G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921241 ID=FC921241; Name=FC921241; organism=Citrus clementina; type=EST; length=708bp
GAAAGTGGATATGTGTTGCGGGAAAACAGTTCTGTTTGTGGTGCTTGCAT
TTGCACTTGCACTTGCAAGCAAAGGGTATGCACAAGATGCAGCACCACTT
GTTCCTGCAATCATAACATTTGGTGATTCTGCTGTAGATGTTGGAAACAA
CAACTATCTTGCCACCCTTTTCAAGGCTAATTACCCTCCTTATGGAAGGG
ACTTTATCAATCATCAACCTACTGGAAGATTTTGCAATGGGAAATTAGCC
ACTGACTTCACTGCTGATACCCTAGGCTTTAAGACTTATGCGCCAGCATA
TCTCAGCCCACAGGCTACAGGGAAAAACCTCCTTATTGGAGCCAACTTTG
CTTCAGCGGGATCTGGTTATGATGACAGGACATCCTACTTAAATCATGCA
ATTTCATTGACTCAGCAGTTGCAGTACTATAGAGAGTACCAGAGTAAGCT
AGCAAAGGTAGCCGGTAGCAAACAATCAGCTTCCATAATCAAGGATGCGA
TATACATAGTGGGTTCTGGGAGTGGTGACTTTCTTCAGAATTACTATGTC
AATCCTTTACTTAACAAAGTCTACACTCCTGAGCAGTATAGCTCAATGCT
TGTCAATATTTTCTCAAGTTTTATTAAGAACATGTATGGATTGGGGGCAA
GAAAATTTGGAGTGACTTCACTGCCACCATTGGGTTGCCTTCAGCAGCAG
AAACTTAT
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