FC921245

Overview
NameFC921245
Unique NameFC921245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.681e-77
Identity = 136/181 (75.14%), Postives = 150/181 (82.87%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            T KIIAEYIWIGGSGMD+RSKARTLPGPVS+P+KLPKWNYDGSST QA G+DSEVILYPQAIFKDPFR+GNNILVMCDAY PAG+PIPTN RH A KIF H +V AEEPW+GIEQEYTLL+KDVKWPL                   ADKA+GRDIVD+HYKACLY+G++I G NGEVMPG
Sbjct:   16 TKKIIAEYIWIGGSGMDIRSKARTLPGPVSNPTKLPKWNYDGSSTDQAAGDDSEVILYPQAIFKDPFRKGNNILVMCDAYRPAGDPIPTNNRHKAVKIFDHPNVKAEEPWFGIEQEYTLLKKDVKWPLGWPLGGFPGPQGPYYCAVGADKAFGRDIVDAHYKACLYSGLSIGGANGEVMPG 196
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLN13_ORYSJ (Glutamine synthetase cytosolic isozyme 1-3 OS=Oryza sativa subsp. japonica GN=GLN1-3 PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.062e-76
Identity = 132/181 (72.93%), Postives = 148/181 (81.77%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            TDK+IAEYIW+GG+GMD+RSKARTL GPV DPSKLPKWN+DGSSTGQA G+DSEVIL+PQAIF+DPFR+G NILVMCD Y P GEPIPTN R+ AA+IFSH DV AEEPWYGIEQEYTLLQK + WPL                   ADK++GRDIVD+HYKACL+AGINISGIN EVMPG
Sbjct:   18 TDKVIAEYIWVGGTGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVMCDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHINWPLGWPLGGYPGPQGPYYCAAGADKSYGRDIVDAHYKACLFAGINISGINAEVMPG 198
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_MAIZE (Glutamine synthetase root isozyme 2 OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.683e-75
Identity = 136/181 (75.14%), Postives = 148/181 (81.77%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            T KIIAEYIW+GGSGMD+RSKARTL GPV DPSKLPKWN+DGSSTGQAPG+DSEVIL P+AIF+DPFR+G NILVMCD Y P GEPIP+NKRH AAKIFSH DV AEEPW+GIEQEYTLLQKD KWPL                   ADK++GRDIVD  YKACLYAGI+ISGINGEVMPG
Sbjct:   16 TGKIIAEYIWVGGSGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQAPGDDSEVILCPRAIFRDPFRKGQNILVMCDCYEPNGEPIPSNKRHGAAKIFSHPDVKAEEPWFGIEQEYTLLQKDTKWPL-GWPLAYPGPQGPYYCAAGADKSYGRDIVDCAYKACLYAGIDISGINGEVMPG 195
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.505e-75
Identity = 135/181 (74.59%), Postives = 147/181 (81.22%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            TD IIAEYIWIGG+G+D+RSK+RT+  PV  PS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CDAYTP GEPIPTNKRH AA+IFS+  V AE PWYGIEQEYTLLQ DVKWPL                   ADK++GRDI D+HYKACLYAGINISG NGEVMPG
Sbjct:   72 TDSIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPQGEPIPTNKRHKAAEIFSNPKVEAEIPWYGIEQEYTLLQTDVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPG 252
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 4.577e-75
Identity = 134/181 (74.03%), Postives = 149/181 (82.32%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            TD IIAEYIWIGG+G+D+RSK+RT+  PVS PS++PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CDAYTPAGEPIPTNKRH AA+IFS+  V AE PWYGIEQEYTLLQ +VKWPL                   ADK++GRDI D+HYKAC+YAGINISG NGEVMPG
Sbjct:   74 TDSIIAEYIWIGGTGIDVRSKSRTISKPVSHPSEVPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVVCDAYTPAGEPIPTNKRHRAAEIFSNPKVEAEIPWYGIEQEYTLLQTNVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACIYAGINISGTNGEVMPG 254
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 4.577e-75
Identity = 131/181 (72.38%), Postives = 149/181 (82.32%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            TDKIIAEYIW+GG+G+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILVMCD YTPAGEPIPTNKR+ AA++FS   VV++ PW+GIEQEYTLLQ+DV WPL                   +DK++GRDI D+HYKACLYAGINISG NGEVMPG
Sbjct:   72 TDKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQVPWFGIEQEYTLLQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGINISGTNGEVMPG 252
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.020e-74
Identity = 132/181 (72.93%), Postives = 149/181 (82.32%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            TDKIIAEYIWIGG+G+D+RSK+RT+  PV  PS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CDAYTPAGEPIPTNKRH AA++FS+  V+AE PW+GIEQEYTLLQ +V WPL                   ADK++GRDI D+HYKACL+AGINISG NGEVMPG
Sbjct:   73 TDKIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPAGEPIPTNKRHRAAEVFSNPRVIAEVPWFGIEQEYTLLQTNVNWPLGWPVGGYPGPQGPYYCSAGADKSFGRDISDAHYKACLFAGINISGTNGEVMPG 253
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.272e-74
Identity = 130/181 (71.82%), Postives = 146/181 (80.66%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            TDK+IAEYIW+GGSG+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNN+LV+CD YTP GEP+PTNKRH AA+IFS   V  + PW+GIEQEYTLLQKDV WPL                   ADK++GRDI D+HYKACLYAGINISG NGEVMPG
Sbjct:   67 TDKVIAEYIWVGGSGIDIRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNVLVICDTYTPQGEPLPTNKRHRAAQIFSDPKVGEQVPWFGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCAVGADKSFGRDISDAHYKACLYAGINISGTNGEVMPG 247
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 3.875e-74
Identity = 131/181 (72.38%), Postives = 147/181 (81.22%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            +D+IIAEYIWIGGSG+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFR GNNILV+CD +TPAGEPIPTNKR  AA+IFS+  V  E PW+GIEQEYTLLQ++VKWPL                   ADK WGRDI D+HYKACLYAGINISG NGEVMPG
Sbjct:   74 SDRIIAEYIWIGGSGIDLRSKSRTIEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTWTPAGEPIPTNKRAKAAEIFSNKKVSGEVPWFGIEQEYTLLQQNVKWPLGWPVGAFPGPQGPYYCGVGADKIWGRDISDAHYKACLYAGINISGTNGEVMPG 254
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.061e-74
Identity = 132/181 (72.93%), Postives = 146/181 (80.66%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            TD+IIAEYIWIGGSG+D+RSK+RTL  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFR GNNILV+CD YTPAGEPIPTNKR  AA+IFS+  V  E PW+GIEQEYTLLQ +V WPL                   A+K+WGRDI D+HYKACLYAGINISG NGEVMPG
Sbjct:   72 TDRIIAEYIWIGGSGIDLRSKSRTLEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTYTPAGEPIPTNKRARAAEIFSNKKVNEEIPWFGIEQEYTLLQPNVNWPLGWPVGAYPGPQGPYYCGVGAEKSWGRDISDAHYKACLYAGINISGTNGEVMPG 252
The following BLAST results are available for this feature:
BLAST of FC921245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLN15_ARATH1.681e-7775.14Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLN13_ORYSJ7.062e-7672.93Glutamine synthetase cytosolic isozyme 1-3 OS=Oryz... [more]
GLNA2_MAIZE2.683e-7575.14Glutamine synthetase root isozyme 2 OS=Zea mays GN... [more]
GLNA2_MEDSA3.505e-7574.59Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_PEA4.577e-7574.03Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_ORYSJ4.577e-7572.38Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]
GLNA4_PHAVU1.020e-7472.93Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNAC_MAIZE2.272e-7471.82Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNA2_ARATH3.875e-7472.38Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLNAC_BRANA5.061e-7472.93Glutamine synthetase, chloroplastic OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionC32102G11EF RVDevelopN Citrus clementina cDNA clone C32102G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921245 ID=FC921245; Name=FC921245; organism=Citrus clementina; type=EST; length=680bp
GGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCTCATTAC
CAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCT
GCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGACAAGATCA
TCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGGAGCAAA
GCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTG
GAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAG
TGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCAAC
AATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACCAATTCC
AACAAACAAAAGACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTG
TGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAG
AAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCC
TCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCG
ACATTGTAGACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATC
AGTGGCATCAATGGAGAAGTCATGCCGGGG
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