FC921245

Overview
NameFC921245
Unique NameFC921245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 6.609e-74
Identity = 129/181 (71.27%), Postives = 146/181 (80.66%), Query Frame = 3
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            TDKIIAEYIW+GGSG+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CD YTP GEPIPTNKRH AA+IFS   V ++ PW+GIEQEYTL+Q+DV WPL                   +DK++GRDI D+HYKACLYAGI ISG NGEVMPG
Sbjct:   78 TDKIIAEYIWVGGSGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHMAAQIFSDPKVTSQVPWFGIEQEYTLMQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGIEISGTNGEVMPG 258          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 6.609e-74
Identity = 130/181 (71.82%), Postives = 147/181 (81.22%), Query Frame = 3
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            TDKIIAEYIWIGG+G+D+RSK+RT+  PV  PS+LPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFR GNNILV+CD YTP GEPIPTNKRH AA+IFS + V+ E PW+GIEQEYTL+Q+DV WPL                   ADK++GRDI D+HYKACLYAGINISG NGEVMPG
Sbjct:   76 TDKIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGDDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHKAAQIFSDAKVLGEVPWFGIEQEYTLMQQDVNWPLGWNVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPG 256          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.280e-73
Identity = 132/181 (72.93%), Postives = 145/181 (80.11%), Query Frame = 3
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            T+K+IAEYIWIGGSGMDMRSKAR+L GPVS   +LPKWNYDGSSTGQA G DSEVILYPQAIF+DPFRRG +ILV+CDAY+P G  IP+NKR AAAKIF+   V  EE WYG+EQEYTLLQKDVKWPL                   ADKAWGRDIVD+HYKACLY+GINISGINGEVMPG
Sbjct:   17 TEKVIAEYIWIGGSGMDMRSKARSLSGPVSSVKELPKWNYDGSSTGQAQGHDSEVILYPQAIFRDPFRRGKHILVICDAYSPNGTAIPSNKRAAAAKIFNEKAVSDEETWYGLEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDAHYKACLYSGINISGINGEVMPG 197          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA1_DAUCA (Glutamine synthetase cytosolic isozyme OS=Daucus carota GN=GLN1 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.246e-72
Identity = 133/181 (73.48%), Postives = 145/181 (80.11%), Query Frame = 3
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            TDK IAEYIWI   G  +RSKARTL GPV DP+KLPKWN+DGSSTGQ PG+DSEVI+YPQAIFKDPFRRGN+ILVMCD YTPAGEPIPTNKR  AAKIFSH DV AE PW+GIEQEYTLL+K+V  P+                   ADKA+GRDIVD+HYKACLYAGINISGINGEVMPG
Sbjct:   16 TDKFIAEYIWIDAVG-GLRSKARTLSGPVDDPTKLPKWNFDGSSTGQGPGDDSEVIIYPQAIFKDPFRRGNHILVMCDTYTPAGEPIPTNKRCNAAKIFSHPDVAAEVPWFGIEQEYTLLKKEVNCPIGCPTGGYPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGINISGINGEVMPG 195          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.692e-50
Identity = 101/188 (53.72%), Postives = 119/188 (63.30%), Query Frame = 3
Query:  144 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTP----------AGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            KI AEY+WIGGS  D+RSK+RTL    + P  LP WNYDGSSTGQAPG DSEV L P++IFKDPFR G+NILVMCD Y P          A +PIPTN R A A++   +    EEPW+GIEQEYTLL    KWPL                   A  A GRD+ + HY+ CL AG+NISG+N EV+P
Sbjct:   37 KICAEYVWIGGSMHDVRSKSRTLSTIPTKPEDLPHWNYDGSSTGQAPGHDSEVYLIPRSIFKDPFRGGDNILVMCDCYEPPKVNPDGTLAAPKPIPTNTRFACAEVMEKAK--KEEPWFGIEQEYTLLNAITKWPLGWPKGGYPAPQGPYYCSAGAGVAIGRDVAEVHYRLCLAAGVNISGVNAEVLP 222          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_DROME (Glutamine synthetase 2 cytoplasmic OS=Drosophila melanogaster GN=Gs2 PE=2 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 4.178e-44
Identity = 92/175 (52.57%), Postives = 108/175 (61.71%), Query Frame = 3
Query:  153 AEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            A Y+WI G+G D+R K RTL      P +LP WNYDGSS  QA G +S+  LYP AI+KDPFRRGNNILVMCD Y   G P  TNKR    ++   +   AEEPW+GIEQEYT L  D   PL                   A+K + RDIVD+HY+ACLYAGI +SG N EVMP
Sbjct:   34 ATYVWIDGTGEDLRCKDRTLDFIPQSPKELPVWNYDGSSCYQAEGSNSDTYLYPVAIYKDPFRRGNNILVMCDTYKFDGTPTDTNKRKTCLEV--ANKCAAEEPWFGIEQEYTFLDFD-GHPLGWPKNGFPGPQGPYYCGVGANKVYARDIVDAHYRACLYAGIKVSGTNAEVMP 205          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.535e-41
Identity = 88/182 (48.35%), Postives = 115/182 (63.19%), Query Frame = 3
Query:  144 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLL---QKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            K+IAEY+W+ G+G ++RSKARTL   ++   +LP+WN+DGSST QAPG DS++ L P A + DPFRRG+NI V+ + +   G P   N RH A K+F +H D   EE W+GIEQEYTL         WP                    A K + RD++++HY+ACLYAGINISGIN EVMP
Sbjct:   23 KVIAEYVWVDGTG-NLRSKARTLNKVITSIEQLPEWNFDGSSTNQAPGYDSDIYLKPVAFYPDPFRRGDNITVLAECFNSDGTPNKFNHRHEANKLFQAHKD---EEIWFGIEQEYTLFDMYDNVYAWP----KGGYPAPQGPYYCGVGAGKVYARDVIEAHYRACLYAGINISGINAEVMP 196          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.535e-41
Identity = 88/179 (49.16%), Postives = 110/179 (61.45%), Query Frame = 3
Query:  141 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            DKI AEY+WI G G  +R K  T+   V+D  +L  W++DGSST QAPG DS+V L P AIFKDPFR G+NILV+ + Y   G P  TN RH A K+F   +    EPW+G+EQEYTL   D + P                      K + RD++++HY+ACLYAGINISGIN EVMP
Sbjct:   20 DKIQAEYVWIDGDG-GLRCKTTTVSKKVTDIGQLRIWDFDGSSTNQAPGHDSDVYLRPAAIFKDPFRGGDNILVLAETYNNDGTPNRTNHRHHAKKVF--DEAKEHEPWFGLEQEYTLFDADDQ-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGINISGINAEVMP 194          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.258e-40
Identity = 89/182 (48.90%), Postives = 117/182 (64.29%), Query Frame = 3
Query:  144 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTL--LQKDV-KWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            +IIAEY+WI G+G ++RSK RTL   ++   +LP+WN+DGSST QAPG DS++ L P A + DPFRRG+NI+V+   Y   G P   N RH AAK+F +H D   EE W+G+EQEYTL  +  DV  WP                    A K + RD++++HY+ACLYAG+ ISGIN EVMP
Sbjct:   23 RIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHKD---EEIWFGLEQEYTLFDMYDDVYGWP----KGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMP 196          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.643e-40
Identity = 87/181 (48.07%), Postives = 113/181 (62.43%), Query Frame = 3
Query:  147 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQKDVK---WPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            IIAEY+WI   G  +RSK RTL   V+    LP+WN+DGSSTGQAPG DS++ L P A + DPFRRG+NI+V+ + +   G P   N RH AAK+F +H D    E W+G+EQEYTL  +  +   WP                    A K + RD++++HY+ACLYAG+NISGIN EVMP
Sbjct:   26 IIAEYVWIDSEG-GLRSKGRTLNKKVTSVDSLPEWNFDGSSTGQAPGHDSDIYLKPVAFYPDPFRRGDNIVVLAECWNNDGTPNKFNHRHEAAKLFEAHKDA---EMWFGLEQEYTLFDQYDQVYGWP----KGGFPAPQGPYYCGVGAGKVFARDVIEAHYRACLYAGVNISGINAEVMP 198          
The following BLAST results are available for this feature:
BLAST of FC921245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_HORVU6.609e-7471.27Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_DAUCA6.609e-7471.82Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA_PINSY3.280e-7372.93Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA1_DAUCA1.246e-7273.48Glutamine synthetase cytosolic isozyme OS=Daucus c... [more]
GLNA1_CHLRE8.692e-5053.72Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA2_DROME4.178e-4452.57Glutamine synthetase 2 cytoplasmic OS=Drosophila m... [more]
GLNA_CANGA2.535e-4148.35Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]
GLNA_AGABI2.535e-4149.16Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA_YEAST1.258e-4048.90Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]
GLNA_KLULA1.643e-4048.07Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]

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Properties
Property NameValue
Genbank descriptionC32102G11EF RVDevelopN Citrus clementina cDNA clone C32102G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921245 ID=FC921245; Name=FC921245; organism=Citrus clementina; type=EST; length=680bp
GGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCTCATTAC
CAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCT
GCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGACAAGATCA
TCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGGAGCAAA
GCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTG
GAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAG
TGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCAAC
AATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACCAATTCC
AACAAACAAAAGACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTG
TGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAG
AAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCC
TCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCG
ACATTGTAGACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATC
AGTGGCATCAATGGAGAAGTCATGCCGGGG
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