FC921245

Overview
NameFC921245
Unique NameFC921245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.146e-40
Identity = 86/179 (48.04%), Postives = 109/179 (60.89%), Query Frame = 3
Query:  141 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            DKI AEY+W+ G G  +RSK  T+   V+D   L  W++DGSST QAPG DS+V L P AIFKDPFR G+NILV+ + Y   G P  TN RH AAK+   +    + PW+G+EQEYTL   D   P                      K + RD++++HY+ACLY+GINISGIN EVMP
Sbjct:   20 DKIQAEYVWVDGDG-GLRSKTTTVSKKVTDIGSLRIWDFDGSSTNQAPGHDSDVYLRPAAIFKDPFRGGDNILVLAETYNSDGTPNRTNFRHHAAKVMEQAK--EDVPWFGLEQEYTLFDADGS-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYSGINISGINAEVMP 194          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_PANAR (Glutamine synthetase OS=Panulirus argus PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.661e-40
Identity = 83/178 (46.63%), Postives = 113/178 (63.48%), Query Frame = 3
Query:  144 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            K  A YIW+ G+G ++RSK RTL      PS+LP WN+DGSSTGQA   +S+V LYP A+++DPFR GNN LV+C+ Y    +P  TN+R    ++ + +    + PW+G+EQEYTLL  D K PL                   A++ +GRD+V++HY+ACL AGINISG N +VMP
Sbjct:   22 KCQAMYIWVDGTGENLRSKTRTLNFTPKSPSELPIWNFDGSSTGQAERSNSDVYLYPVAVYRDPFRLGNNKLVLCETYKYNKKPADTNQRWKCMEVMTRA--ADQHPWFGMEQEYTLLDID-KHPLGWPKNGYPGPQGPYYCGVGANRVYGRDVVEAHYRACLCAGINISGENAKVMP 196          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_ASHGO (Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.373e-39
Identity = 86/181 (47.51%), Postives = 112/181 (61.88%), Query Frame = 3
Query:  147 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQKD---VKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            +IAEYIW+  +G  +RSK RTL   V    +LP+WN+DGSSTGQAPG DS+V L P A + DPFRRG+NI+V+ + +   G P   N RH AAK+F +H    A + W+G+EQEYTL   +     WP                    A K + RD+V++HY+ACLYAG+ ISGIN EVMP
Sbjct:   23 VIAEYIWVDSAG-HLRSKGRTLQRRVESVDELPEWNFDGSSTGQAPGHDSDVYLKPVAFYPDPFRRGDNIIVLAECWNNDGTPNKYNHRHEAAKLFEAHR---AADIWFGLEQEYTLFDHNDNVYGWP----KGGFPAPQGPYYCGVGAGKVYARDVVEAHYRACLYAGLRISGINAEVMP 195          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_EMENI (Glutamine synthetase OS=Emericella nidulans GN=glnA PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.099e-39
Identity = 84/177 (47.46%), Postives = 108/177 (61.02%), Query Frame = 3
Query:  147 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            ++AEYIWI   G   RSK +TL    S   +LP+WN+DGSST QAPG++S+V L P A++ DPFRRG+NILV+C+ +   G P   N RH  A++        EE W+G+EQEYTLL  D  WP                      K + RDIV++HY+ACLYAG+ ISGIN EVMP
Sbjct:   12 VMAEYIWIDAHG-GTRSKTKTLSKAPSSVDELPEWNFDGSSTAQAPGDNSDVYLRPVAMYPDPFRRGDNILVLCETWDSDGSPNKFNYRHDCARLMETH--AKEEFWFGLEQEYTLLGPD-GWPYGWPKGGFPGAQGPYYCGVGTGKVYCRDIVEAHYRACLYAGVKISGINAEVMP 184          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_TUBBO (Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.286e-39
Identity = 88/181 (48.62%), Postives = 110/181 (60.77%), Query Frame = 3
Query:  147 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQ---KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            I+AEYIWI G+   +RSK +TL    S    LP+WN+DGSSTGQAPGEDS++ L P AIF DPFR G+NILV+ + +   G P   N RH  AKI  +H D   ++PW+G+EQEYTL         WP                      K + RDIV++HYKACL+AGI ISGIN EV+P
Sbjct:   26 ILAEYIWIDGAN-GVRSKTKTLFKKPSSVEDLPEWNFDGSSTGQAPGEDSDIYLRPVAIFPDPFRMGDNILVLAECWNADGSPNKFNHRHECAKIMEAHKD---QKPWFGLEQEYTLFDLYGNPYGWP----KGGFPGPQGPYYCGVGTGKVYCRDIVEAHYKACLFAGIKISGINAEVLP 198          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.009e-38
Identity = 88/182 (48.35%), Postives = 110/182 (60.44%), Query Frame = 3
Query:  144 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLL---QKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            K++AEYIWI G    +RSK  TL    S   +L  WN+DGSSTGQAPG +S+ +L P A++ DPFRRG+NILV+   YT  G P   N R A AK+   H+D   +E W+GIEQEYT+L    +   WP                      + + RDIV++HYKACLYAGINISGIN EVMP
Sbjct:   27 KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGSSTGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHAD---KETWFGIEQEYTMLDYYDRPFGWP----KGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYAGINISGINAEVMP 200          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_SUIBO (Glutamine synthetase OS=Suillus bovinus GN=GLNA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.623e-38
Identity = 83/180 (46.11%), Postives = 108/180 (60.00%), Query Frame = 3
Query:  141 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            DK+ AEY+WI G G  +RSK  T+    +D  +L  W++DGSST QAPG DS+V L P AIFKDPFR G+NILV+ + +   G P  TN RH   K+    D+  +  PW+G+EQEYTL   D   P                      K + RD++++HY+ACLYAG+NISGIN EVMP
Sbjct:   20 DKVQAEYVWIDGDG-GLRSKTMTMTKKTTDIGQLRIWDFDGSSTNQAPGGDSDVYLRPAAIFKDPFRGGDNILVLAETFNNDGTPNRTNHRHHTKKVM---DLAKDSVPWFGLEQEYTLFDAD-GTPFGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGVNISGINAEVMP 194          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_AMAMU (Glutamine synthetase OS=Amanita muscaria GN=GLN1 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.623e-38
Identity = 85/178 (47.75%), Postives = 106/178 (59.55%), Query Frame = 3
Query:  144 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            K  AEY+WI G G  +RSK  T+   V+D S+L  W++DGSST QAP  +S+V L P AIFKDPFR G NILV+ + Y   G P  TN RH  AK+   +    E PW+GIEQEYTL   D   P                      K + RD++++HY+ACLYAG+NISGIN EVMP
Sbjct:   21 KFHAEYVWIDGDG-GLRSKTTTVDQKVTDISQLRVWDFDGSSTNQAPSGNSDVYLRPSAIFKDPFRGGENILVLSETYNNDGTPNRTNHRHHTAKVMELAK--DEIPWFGIEQEYTLFDADGS-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGVNISGINAEVMP 194          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.475e-38
Identity = 89/181 (49.17%), Postives = 110/181 (60.77%), Query Frame = 3
Query:  144 KIIAEYIWIGGSGMDMRSKARTLPGPVSD--PSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            ++IAEYIWI   G   RSK+RTLP   S   P +LP WN+DGSSTGQAPGE+S+V L P A+F DPFR   NILV+ + +   G P   N RH AAK+  +H+D V   PW+G+EQEYTLL  + + P                      K   RDIV++HYK CLYAG+ ISG N EVMP
Sbjct:   25 QLIAEYIWIDSEG-GTRSKSRTLPEKESQYLPEELPIWNFDGSSTGQAPGENSDVYLKPVAVFPDPFRGSPNILVLSECWNADGTPNKFNHRHEAAKLMEAHADQV---PWFGLEQEYTLLDINDR-PYGWPRNGFPAPQGPYYCGVGTGKVVQRDIVEAHYKCCLYAGVKISGTNAEVMP 200          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_DEBHA (Glutamine synthetase OS=Debaryomyces hansenii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.475e-38
Identity = 80/179 (44.69%), Postives = 111/179 (62.01%), Query Frame = 3
Query:  144 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            K++AEY+WI   G + RSK +TL    S    LP+WN+DGSSTGQAPG DS+V L P A + DPFR+G+NI+V+ + +   G P   N RH +AK+  +H+D   EE W+G+EQEYTL  +    P                      K + RD++++HY+ACL+AG++ISGIN EVMP
Sbjct:   22 KVLAEYVWIDADG-NSRSKCKTLDKKPSSVEDLPEWNFDGSSTGQAPGHDSDVYLRPVAFYADPFRKGDNIIVLTECWNNDGTPNKFNHRHESAKLMKAHAD---EEVWFGLEQEYTLFDQ-FDQPYAWPKGGFPAPQGPYYCGVGTGKVYARDLIEAHYRACLHAGVDISGINAEVMP 195          
The following BLAST results are available for this feature:
BLAST of FC921245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_HEBCY2.146e-4048.04Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]
GLNA_PANAR3.661e-4046.63Glutamine synthetase OS=Panulirus argus PE=2 SV=1[more]
GLNA_ASHGO2.373e-3947.51Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE... [more]
GLNA_EMENI3.099e-3947.46Glutamine synthetase OS=Emericella nidulans GN=gln... [more]
GLNA_TUBBO5.286e-3948.62Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2... [more]
GLNA_SCHPO2.009e-3848.35Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]
GLNA_SUIBO2.623e-3846.11Glutamine synthetase OS=Suillus bovinus GN=GLNA PE... [more]
GLNA_AMAMU2.623e-3847.75Glutamine synthetase OS=Amanita muscaria GN=GLN1 P... [more]
GLNA_NEUCR4.475e-3849.17Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]
GLNA_DEBHA4.475e-3844.69Glutamine synthetase OS=Debaryomyces hansenii GN=G... [more]

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Properties
Property NameValue
Genbank descriptionC32102G11EF RVDevelopN Citrus clementina cDNA clone C32102G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921245 ID=FC921245; Name=FC921245; organism=Citrus clementina; type=EST; length=680bp
GGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCTCATTAC
CAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCT
GCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGACAAGATCA
TCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGGAGCAAA
GCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTG
GAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAG
TGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCAAC
AATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACCAATTCC
AACAAACAAAAGACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTG
TGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAG
AAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCC
TCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCG
ACATTGTAGACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATC
AGTGGCATCAATGGAGAAGTCATGCCGGGG
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