FC921245

Overview
NameFC921245
Unique NameFC921245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_COLGL (Glutamine synthetase OS=Colletotrichum gloeosporioides GN=GLN1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.633e-38
Identity = 85/177 (48.02%), Postives = 103/177 (58.19%), Query Frame = 3
Query:  147 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            I+AEYIWI   G + RSK+RTL      P  LP WN+DGSSTGQAPG++S+V L P A+F DPFR   NILV+ + +   G P   N RH  AK+       A EPW+G+EQEYTLL    + P                      K   RDIVD+HYKACLY+G+ ISG N EVMP
Sbjct:   26 IMAEYIWIDADG-ETRSKSRTLKEKEYTPEDLPMWNFDGSSTGQAPGDNSDVYLKPVAVFPDPFRGSPNILVLSECWNADGTPNKYNYRHECAKLMEAH--AAHEPWFGLEQEYTLLDLSNR-PFGWPANGFPAPQGPYYCGVGTGKVVQRDIVDAHYKACLYSGVKISGTNAEVMP 198          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_SQUAC (Glutamine synthetase, mitochondrial OS=Squalus acanthias PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.969e-38
Identity = 82/177 (46.33%), Postives = 108/177 (61.02%), Query Frame = 3
Query:  144 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVM 674
            K+ A YIWI G+G  +R K RTL       ++LP+WN+DGSST Q+ G +S++ L P A+F+DPFRR  N LV+C+      +P  +N RH+  KI S   +  E PW+G+EQEYTLL  D   P                    ADKA+GRDIV++HY+ACLYAGI +SG N EVM
Sbjct:   54 KVQAMYIWIDGTGEAVRCKTRTLDNEPKSIAELPEWNFDGSSTYQSEGSNSDMYLVPSAMFRDPFRRDPNKLVLCEVLKYNRKPAESNLRHSCQKIMSM--IANEYPWFGMEQEYTLLGTD-GHPFGWPSNCFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIELSGTNAEVM 227          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_CANFA (Glutamine synthetase OS=Canis familiaris GN=GLUL PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 9.969e-38
Identity = 81/180 (45.00%), Postives = 110/180 (61.11%), Query Frame = 3
Query:  141 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVA-EEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            +K+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I    D+V+ + PW+G+EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAGI I+G N EVMP
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKGVEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIAGTNAEVMP 199          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_BOVIN (Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4)

HSP 1 Score: 156.762 bits (395), Expect = 9.969e-38
Identity = 82/180 (45.56%), Postives = 109/180 (60.56%), Query Frame = 3
Query:  141 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVA-EEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            DK+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I    D+V+ + PW+G+EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAGI I G N EVMP
Sbjct:   24 DKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIM---DMVSNQRPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIGGTNAEVMP 199          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.700e-37
Identity = 80/179 (44.69%), Postives = 109/179 (60.89%), Query Frame = 3
Query:  141 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            +KI   YIW+ G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L+P A+F+DPFRR  N LV C+ +    +P  TN RH+  +I     V ++ PW+G+EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAGI I+G N EVMP
Sbjct:   24 EKIQLMYIWVDGTGEGLRCKTRTLDCDPKCVEELPEWNFDGSSTFQSEGSNSDMYLHPVAMFRDPFRRDPNKLVFCEVFKYNRKPAETNLRHSCKRIMDM--VSSQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKITGTNAEVMP 199          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_PIG (Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 2.900e-37
Identity = 81/180 (45.00%), Postives = 109/180 (60.56%), Query Frame = 3
Query:  141 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVA-EEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            +K+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I    D+V+ + PW+G+EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAGI I G N EVMP
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIGGTNAEVMP 199          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 155.221 bits (391), Expect = 2.900e-37
Identity = 79/180 (43.89%), Postives = 112/180 (62.22%), Query Frame = 3
Query:  141 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVA-EEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            +K+ A YIW+ G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L+P A+F+DPFR+  N LV+C+ +    +P  TN RH   +I    D+V+ + PW+G+EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAG+ I+G N EVMP
Sbjct:   24 EKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSEGSNSDMYLHPVAMFRDPFRKDPNKLVLCEVFKYNRKPAETNLRHICKRIM---DMVSNQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKITGTNAEVMP 199          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.947e-37
Identity = 81/180 (45.00%), Postives = 108/180 (60.00%), Query Frame = 3
Query:  147 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKD---VKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            ++AEYIWI     ++RSK +TL    +    LP+WN+DGSST QAPG DS++ L P AI+ DPFRRG+NI+V+ + +   G P   N RH  AK+ S  +   E  W+GIEQEYT+  +    V WP                      K + RD+V++HY+ACLY+GINISGIN EVMP
Sbjct:   15 VLAEYIWIDAH-FNIRSKCKTLDKKPTSIEDLPEWNFDGSSTDQAPGHDSDIYLRPAAIYPDPFRRGDNIIVLAECWNNDGTPNKFNHRHECAKLMSAHE--KEVIWFGIEQEYTMFDESDNPVGWP----KGGFPAPQGPYYCGVGTGKVFARDVVEAHYRACLYSGINISGINAEVMP 187          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_HUMAN (Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 SV=4)

HSP 1 Score: 154.451 bits (389), Expect = 4.947e-37
Identity = 79/180 (43.89%), Postives = 110/180 (61.11%), Query Frame = 3
Query:  141 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVA-EEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            +K+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV+C+ +     P  TN RH   +I    D+V+ + PW+G+EQEYTL+  D   P                    AD+A+GRDIV++HY+ACLYAG+ I+G N EVMP
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMP 199          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_CHICK (Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.461e-37
Identity = 81/180 (45.00%), Postives = 108/180 (60.00%), Query Frame = 3
Query:  141 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVA-EEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            +K+ A YIWI G+G  +R K RTL         LP+WN+DGSST QA G +S++ L P A+F+DPFR+  N LV+C+ +    +   TN RH   +I    D+V+ + PW+G+EQEYTLL  D   P                    ADKA+GRDIV++HY+ACLYAG+ I G N EVMP
Sbjct:   24 EKVQAMYIWIDGTGEHLRCKTRTLDHEPKSLEDLPEWNFDGSSTFQAEGSNSDMYLRPAAMFRDPFRKDPNKLVLCEVFKYNRQSADTNLRHTCRRIM---DMVSNQHPWFGMEQEYTLLGTD-GHPFGWPSNCFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKIGGTNAEVMP 199          
The following BLAST results are available for this feature:
BLAST of FC921245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_COLGL7.633e-3848.02Glutamine synthetase OS=Colletotrichum gloeosporio... [more]
GLNA_SQUAC9.969e-3846.33Glutamine synthetase, mitochondrial OS=Squalus aca... [more]
GLNA_CANFA9.969e-3845.00Glutamine synthetase OS=Canis familiaris GN=GLUL P... [more]
GLNA_BOVIN9.969e-3845.56Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV... [more]
GLNA_RAT1.700e-3744.69Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]
GLNA_PIG2.900e-3745.00Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV... [more]
GLNA_MOUSE2.900e-3743.89Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]
GLNA_YARLI4.947e-3745.00Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_HUMAN4.947e-3743.89Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 ... [more]
GLNA_CHICK6.461e-3745.00Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC32102G11EF RVDevelopN Citrus clementina cDNA clone C32102G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921245 ID=FC921245; Name=FC921245; organism=Citrus clementina; type=EST; length=680bp
GGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCTCATTAC
CAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCT
GCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGACAAGATCA
TCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGGAGCAAA
GCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTG
GAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAG
TGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCAAC
AATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACCAATTCC
AACAAACAAAAGACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTG
TGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAG
AAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCC
TCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCG
ACATTGTAGACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATC
AGTGGCATCAATGGAGAAGTCATGCCGGGG
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