FC921245

Overview
NameFC921245
Unique NameFC921245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.102e-36
Identity = 79/180 (43.89%), Postives = 111/180 (61.67%), Query Frame = 3
Query:  141 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVA-EEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            +K+ A YIW+ G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH+  +I    D+V+ + PW+G+EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAG+ I+G N EVMP
Sbjct:   24 EKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSEGSNSDMYLSPVAMFRDPFRKEPNKLVFCEVFKYNRKPAETNLRHSCKRIM---DMVSNQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKITGTNAEVMP 199          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_MACFA (Glutamine synthetase OS=Macaca fascicularis GN=GLUL PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.880e-36
Identity = 80/181 (44.20%), Postives = 112/181 (61.88%), Query Frame = 3
Query:  141 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGE-PIPTNKRHAAAKIFSHSDVVA-EEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            +K+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV+C+++    E P  TN RH   +I    D+V+ + PW+G+EQEYTL+  D   P                    AD+A+GRDIV++HY+ACLYAG+ I+G N EVMP
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCESFQVQFEGPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMP 200          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.880e-36
Identity = 83/179 (46.37%), Postives = 106/179 (59.22%), Query Frame = 3
Query:  144 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAE-EPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            +I+AEY+W+  +G + RSK+RTLP        LP WN+DGSST QAPG++S+V L P A++ DPFR   NI+V+ + +   G P   N RH   K+    D  AE EPW+G+EQEYTLL  D + P                      K   RDIV++HYKACLYAGI ISG N EVMP
Sbjct:   25 QIMAEYVWVDAAG-ETRSKSRTLPEKDYKAEDLPVWNFDGSSTNQAPGDNSDVYLRPCAVYPDPFRGSPNIIVLAECWNAGGTPNKFNFRHDCVKVM---DTYAEDEPWFGLEQEYTLLGPDNR-PYGWPTGGFPAPQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISGTNAEVMP 198          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.207e-36
Identity = 85/181 (46.96%), Postives = 105/181 (58.01%), Query Frame = 3
Query:  150 IAEYIWIGGSGMDMRSKARTLPGPVSDPSKL---PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG-NNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            I EY+WIGG+G ++RSK R L   +    KL   P WNYDGSST QA G  SEV LYP+ I++ PFRR  N ++V+CD Y   G P+ TN RH A  IF       E+PWYG+EQEY + +KD   P+                   +  A+GR I D H +ACLYAGI ISG N EV PG
Sbjct:   20 IIEYVWIGGNG-ELRSKTRVLYSSIMTGYKLSDIPVWNYDGSSTNQANGSSSEVFLYPRNIYRCPFRRNVNGVIVICDTYDVNGVPLETNHRHNANIIFEKYQ--NEKPWYGLEQEYFIFRKDTNQPI---GMEYASKQGQYYCSVGSQNAYGRRISDEHMEACLYAGIKISGTNLEVAPG 194          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.188e-36
Identity = 83/181 (45.86%), Postives = 105/181 (58.01%), Query Frame = 3
Query:  144 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVK---WPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            ++ AEYIWI   G  +RSK  TL    S  + L +WN+DGSST QAP ++S+V L P AIFKDPFR G NILV+C+ Y   G P  +N R    K+   +     EPW+G+EQEYTL   D +   WP                    A K + RD +++HY+ACLYAGI ISGIN EVMP
Sbjct:   24 RVQAEYIWIDAEG-GIRSKTMTLDKAPSSVADLKEWNFDGSSTNQAPADNSDVFLRPVAIFKDPFRGGANILVLCECYDNDGTPNKSNYRAHCKKVMDAAK--DTEPWFGLEQEYTLFDADGQVFGWP----KNGFPGPQGPYYCGVGAGKVFARDFIEAHYRACLYAGIKISGINAEVMP 197          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.219e-35
Identity = 81/182 (44.51%), Postives = 108/182 (59.34%), Query Frame = 3
Query:  144 KIIAEYIWIGGSGMDMRSKART---LPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            KI A Y+WI G+G ++RSK RT   LP  + D    P WNYDGSSTGQA G DS+  L P A + DPF  G N LVMCD      +P  T+ R A A+I    ++    PW+G+EQEY ++ +D + PL                   AD+A+GR++V++HY+ACL+AG+NI G N EV PG
Sbjct:   29 KIQATYVWIDGTGENLRSKTRTFDKLPKRIED---YPIWNYDGSSTGQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEIM--HEIRDTRPWFGMEQEYLIVDRD-EHPLGWPKHGFPDPQGKYYCSVGADRAFGREVVETHYRACLHAGLNIFGTNAEVTPG 204          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 2.079e-35
Identity = 81/181 (44.75%), Postives = 111/181 (61.33%), Query Frame = 3
Query:  141 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG-NNILVMCDAYTPAGEPIPTNKRHA-AAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            +++ A Y+WI G+G ++R K R L    S    LP W YDGSST QA GE+S+  L P+AI++DPF+ G N+++V+CD Y+  G+P  +NKR A  A I   SD   +EPW+GIEQEYTLL  D + P                    AD+ + RD+V++H  ACLYAGI+ +G N EVMP
Sbjct:   60 NRVQATYLWIDGTGENIRLKDRVLDKVPSSVEDLPDWQYDGSSTYQAHGENSDTTLKPRAIYRDPFKPGKNDVIVLCDTYSADGKPTASNKRAAFQAAIDLISD---QEPWFGIEQEYTLLDVDGR-PFGWPENGFPAPQGPYYCGVGADRVYARDLVEAHVVACLYAGIDFAGTNAEVMP 236          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.631e-35
Identity = 81/178 (45.51%), Postives = 105/178 (58.99%), Query Frame = 3
Query:  147 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            I+AEY+W+   G   RSK+RTLP     P  LP WN+DGSST QAPG++S+V L P A++ DPFR   NI+V+ + +   G P   N RH   K+  +++D   +EP +G+EQEYTLL  D + P                      K   RDIV++HYKACLYAGI ISG N EVMP
Sbjct:   24 IMAEYVWVDADG-GTRSKSRTLPEKEYKPEDLPVWNFDGSSTNQAPGDNSDVYLRPCAVYPDPFRGSPNIIVLAECWNADGTPNKYNFRHDCVKVMDTYAD---DEPLFGLEQEYTLLGSDNR-PYGWPAGGFPAPQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISGTNAEVMP 196          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.318e-33
Identity = 77/179 (43.02%), Postives = 99/179 (55.31%), Query Frame = 3
Query:  141 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 677
            +K+   Y+WI G+G  +R K RTL        ++P+WN+DGSST QA G +S++ L P  +F+DPF    N LVMC+      +   TN RH   KI     V    PW+G+EQEYTLL  +   P                    ADK +GRD+V+SHYKACLYAGI I G N EVMP
Sbjct:   24 EKVQVTYVWIDGTGEGVRCKTRTLDQEPKTIDEIPEWNFDGSSTHQAEGSNSDMYLIPVQMFRDPFCLDPNKLVMCEVLKYNRKSAETNLRHTCKKIMEM--VNDHRPWFGMEQEYTLLGIN-GHPYGWPENGFPGPQGPYYCGVGADKVYGRDVVESHYKACLYAGIKICGTNAEVMP 199          
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 139.428 bits (350), Expect = 1.647e-32
Identity = 74/178 (41.57%), Postives = 105/178 (58.99%), Query Frame = 3
Query:  141 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVA-EEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEV 671
            +K+ A YIW+ G+G  +R K RTL        +LP+WN+DGSST Q+   +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I    D+V+ + PW+G+EQEYTLL  D   P                    ADKA+ RDI+++HY+ACLYAG+ I+G   EV
Sbjct:   24 EKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSESSNSDMYLSPVAMFRDPFRKEPNKLVFCEVFKYNQKPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLLGTD-GHPFGWPSDGFPGPQGLYYCGVGADKAYRRDIMEAHYRACLYAGVKITGTYAEV 197          
The following BLAST results are available for this feature:
BLAST of FC921245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_ACOCA1.102e-3643.89Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]
GLNA_MACFA1.880e-3644.20Glutamine synthetase OS=Macaca fascicularis GN=GLU... [more]
GLNA_FUSSH1.880e-3646.37Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_MIMIV3.207e-3646.96Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA_CRYNE4.188e-3645.86Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_CAEEL1.219e-3544.51Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA1_DROME2.079e-3544.75Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_GIBFU4.631e-3545.51Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA_XENLA3.318e-3343.02Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]
GLNA_CRIGR1.647e-3241.57Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]

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Properties
Property NameValue
Genbank descriptionC32102G11EF RVDevelopN Citrus clementina cDNA clone C32102G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921245 ID=FC921245; Name=FC921245; organism=Citrus clementina; type=EST; length=680bp
GGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCTCATTAC
CAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCT
GCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGACAAGATCA
TCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGGAGCAAA
GCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTG
GAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAG
TGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCAAC
AATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACCAATTCC
AACAAACAAAAGACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTG
TGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAG
AAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCC
TCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCG
ACATTGTAGACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATC
AGTGGCATCAATGGAGAAGTCATGCCGGGG
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