FC921257

Overview
NameFC921257
Unique NameFC921257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: LASS5_HUMAN (LAG1 longevity assurance homolog 5 OS=Homo sapiens GN=LASS5 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 36/116 (31.03%), Postives = 64/116 (55.17%), Query Frame = 3
Query:  354 NETTRAKISKCSESMWKLTYYATVEFCI-LKIACDEPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIIL 698
            N+     ++K  ESMW+ T+Y  + FC  ++     PWF D    +  +P Q L   +  YY+ +  FY +S+      + +RKDF +M  HH++T+ LI +SY   + ++G++I+
Sbjct:  131 NQDKPPTLTKFCESMWRFTFYLCI-FCYGIRFLWSSPWFWDIRQCWHNYPFQPLSSGLYHYYIMELAFY-WSLMFSQFTDIKRKDFLIMFVHHLVTIGLISFSYINNMVRVGTLIM 244          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: LASS2_MOUSE (LAG1 longevity assurance homolog 2 OS=Mus musculus GN=Lass2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/115 (29.57%), Postives = 62/115 (53.91%), Query Frame = 3
Query:  354 NETTRAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIIL 698
            N+   + + K  E+ W+ TYY       + +  D+PWF D    ++G+P Q +      YYM +  FY +S+   +  + +RKDF   + HHV T++L+ +S+F    + G++I+
Sbjct:  123 NQDRPSLLKKFREASWRFTYYLIAFVAGMAVTVDKPWFYDLRKVWEGYPIQSIIPSQYWYYMIELSFY-WSLLFSIASDVKRKDFKEQIIHHVATIILLCFSWFANYVRAGTLIM 236          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: LASS2_HUMAN (LAG1 longevity assurance homolog 2 OS=Homo sapiens GN=LASS2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 34/115 (29.57%), Postives = 61/115 (53.04%), Query Frame = 3
Query:  354 NETTRAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIIL 698
            N+   + + K  E+ W+ T+Y       + +  D+PWF D    ++G+P Q        YYM +  FY +S+   +  + +RKDF   + HHV T++LI +S+F    + G++I+
Sbjct:  123 NQDRPSLLKKFREASWRFTFYLIAFIAGMAVIVDKPWFYDMKKVWEGYPIQSTIPSQYWYYMIELSFY-WSLLFSIASDVKRKDFKEQIIHHVATIILISFSWFANYIRAGTLIM 236          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: LASS2_BOVIN (LAG1 longevity assurance homolog 2 OS=Bos taurus GN=LASS2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 34/115 (29.57%), Postives = 61/115 (53.04%), Query Frame = 3
Query:  354 NETTRAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIIL 698
            N+   + + K  E+ W+ T+Y         +  D+PWF D    ++G+P Q +      YYM +  FY +S+   +  + +RKDF   + HHV T++LI +S+F    + G++I+
Sbjct:  123 NQDRPSLLKKFREASWRFTFYLIAFIAGTAVIVDKPWFYDLRKVWEGYPIQSIIPSQYWYYMIELSFY-WSLLFSIASDVKRKDFKEQIIHHVATIILISFSWFANYVRAGTLIM 236          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: LASS4_MOUSE (LAG1 longevity assurance homolog 4 OS=Mus musculus GN=Lass4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 39/125 (31.20%), Postives = 64/125 (51.20%), Query Frame = 3
Query:  327 NKGRPQLKINETTRAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIILL 701
            N+ RP L           K  E+ W+  +Y         I   E W    +L ++ +P+Q L L +  +Y+ + GFY+ S+   L ++ +RKDF   + HH + V LIG+SY   L +IG+++LL
Sbjct:  123 NQDRPSLS---------KKFCEACWRFVFYLCSFVGGTSILYHESWLWSPSLCWENYPHQTLNLSLYWWYLLELGFYL-SLLITLPFDVKRKDFKEQVVHHFVAVGLIGFSYSVNLLRIGAVVLL 237          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: LASS4_HUMAN (LAG1 longevity assurance homolog 4 OS=Homo sapiens GN=LASS4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 39/125 (31.20%), Postives = 65/125 (52.00%), Query Frame = 3
Query:  327 NKGRPQLKINETTRAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIILL 701
            N+ RPQL           K  E+ W+  +Y +     L +   E W     + +  +PNQ LK  +  +Y+ + GFY+ S+   L ++ +RKDF   + HH + V+L+ +SY   L +IGS++LL
Sbjct:  123 NQDRPQLT---------KKFCEASWRFLFYLSSFVGGLSVLYHESWLWAPVMCWDRYPNQTLKPSLYWWYLLELGFYL-SLLIRLPFDVKRKDFKEQVIHHFVAVILMTFSYSANLLRIGSLVLL 237          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: LASS6_MOUSE (LAG1 longevity assurance homolog 6 OS=Mus musculus GN=Lass6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 32/115 (27.83%), Postives = 62/115 (53.91%), Query Frame = 3
Query:  354 NETTRAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIIL 698
            N+   + +++  ESMW+ ++Y  V    ++     PW  +T   +  +P Q L   +  YY+ +  FY +S+      + +RKDF +M  HH+ T+ LI +SY   + ++G+++L
Sbjct:  122 NQEKPSTLTRFCESMWRFSFYLYVFSYGVRFLKQTPWLWNTRHCWYNYPYQPLTADLHYYYILELSFY-WSLMVSQFTDIKRKDFGIMFLHHLATIFLITFSYVNNMARVGTLVL 235          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: LASS6_HUMAN (LAG1 longevity assurance homolog 6 OS=Homo sapiens GN=LASS6 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 31/115 (26.96%), Postives = 63/115 (54.78%), Query Frame = 3
Query:  354 NETTRAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIIL 698
            N+   + +++  ESMW+ ++Y  V    ++     PW  +T   +  +P Q L   +  YY+ +  FY +S+      + +RKDF +M  HH++++ LI +SY   + ++G+++L
Sbjct:  122 NQEKPSTLTRFCESMWRFSFYLYVFTYGVRFLKKTPWLWNTRHCWYNYPYQPLTTDLHYYYILELSFY-WSLMFSQFTDIKRKDFGIMFLHHLVSIFLITFSYVNNMARVGTLVL 235          
The following BLAST results are available for this feature:
BLAST of FC921257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
LASS5_HUMAN4.168e-1331.03LAG1 longevity assurance homolog 5 OS=Homo sapiens... [more]
LASS2_MOUSE7.110e-1329.57LAG1 longevity assurance homolog 2 OS=Mus musculus... [more]
LASS2_HUMAN9.286e-1329.57LAG1 longevity assurance homolog 2 OS=Homo sapiens... [more]
LASS2_BOVIN1.213e-1229.57LAG1 longevity assurance homolog 2 OS=Bos taurus G... [more]
LASS4_MOUSE1.584e-1231.20LAG1 longevity assurance homolog 4 OS=Mus musculus... [more]
LASS4_HUMAN6.019e-1231.20LAG1 longevity assurance homolog 4 OS=Homo sapiens... [more]
LASS6_MOUSE1.751e-1127.83LAG1 longevity assurance homolog 6 OS=Mus musculus... [more]
LASS6_HUMAN3.901e-1126.96LAG1 longevity assurance homolog 6 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC32102H11EF RVDevelopN Citrus clementina cDNA clone C32102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921257 ID=FC921257; Name=FC921257; organism=Citrus clementina; type=EST; length=716bp
GAAACACGGCTCAAAGATCAAAATTCTCTTCTTTCTTTCTTCCCCTTTTT
TTCAACAAATTAAACTCTTCTTTTGCGCAAAATTAGCTCGAAAATTAAAA
TGCGGTTGTTTTCATTTTCGGCGACGATTAATTGGATTTGTTTTTAGTTT
AACTTTTGTCGTTCTGAATATTGACTCGAAAATCGCGCATGGACCCGATC
CGTAGTGAGAGTATACAGCCGGACGCGTGGCATTTCGTCGTCCCTTTACT
CTTCGCTCCCGGCTTCCTCGTCGCCAGGTTCTTTTTGGATAGATTCATCT
TTCGAAGGCTAGCTCTCCGGTTGTTGAATAAAGGACGTCCCCAGTTGAAG
ATAAATGAAACTACAAGGGCAAAAATTAGCAAATGTTCAGAATCTATGTG
GAAGCTGACATACTATGCTACTGTTGAGTTCTGTATTCTCAAAATTGCCT
GCGATGAGCCATGGTTCACAGATACAAACTTGTACTTCAAAGGCTGGCCA
AATCAAGAGTTGAAGCTTCCTATAATGCTTTATTACATGTGCCAATGTGG
ATTCTATATCTATAGCATTGCTGCACTTCTTACATGGGAGACTCGAAGGA
AGGATTTCGCTGTGATGATGGCTCATCATGTAATTACTGTTCTCCTGATT
GGATACTCATATTTTACTAGGCTTTTCCAGATTGGCTCTATTATCTTGCT
CTGCATGATGCAGTGA
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