FC921282

Overview
NameFC921282
Unique NameFC921282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: IC1_HUMAN (Plasma protease C1 inhibitor OS=Homo sapiens GN=SERPING1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 58/202 (28.71%), Postives = 91/202 (45.05%), Query Frame = 2
Query:   92 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLS--LISAGSKGPT-LDQLLSFLKSKS--DDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKK 682
            D +L L    +  +  ++N+ FSP SI  LL+  L+ AG    T L+ +LS+ K  +     L  F ++ V  V               + ++    L++++TF      +Y ++   +   + A       N W  K TN  +  +L   S+ + TRL+  NA+Y    W  TFD  KT+   FH  N   IKVP M SKK
Sbjct:  148 DFSLKLYHAFSAMKKVETNMAFSPFSIASLLTQVLLGAGENTKTNLESILSYPKDFTCVHQALKGFTTKGVTSV---------------SQIFHSPDLAIRDTFVNASRTLYSSSPRVLSNNSDAN--LELINTWVAKNTNNKISRLLD--SLPSDTRLVLLNAIYLSAKWKTTFDPKKTRMEPFHFKN-SVIKVPMMNSKK 329          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: CBG_MOUSE (Corticosteroid-binding globulin OS=Mus musculus GN=Serpina6 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 51/210 (24.29%), Postives = 104/210 (49.52%), Query Frame = 2
Query:   68 RESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPT--LDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ--TKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKN 685
            R+      D A +L K +    + D N + SP SI + L+++S  ++G T  L+ L   +   S+ +++     L +++    +   G  +++ N +++ ++L LK++F     + Y++ +  +  +  TKA E   + N   + +T G ++ V+    +D+S  LI  N ++ KG W   F    T++ DF++    ++KVP M    N
Sbjct:   32 RDLAPTNVDFAFNLYKRLVALNS-DKNTLISPVSISMALAMLSLSTRGSTQYLENLGFNMSKMSEAEIHQGFQYLNSLLQQSDT---GLEMNMGNVMFLLQNLKLKDSFLADTKHYYESEALTIPSKDWTKAGE---QINNHVKNKTQGKIEHVV--SDLDSSATLILINYIFLKGIWKLPFSPENTREEDFYVNETSTVKVPMMVQSGN 232          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: THBG_SHEEP (Thyroxine-binding globulin OS=Ovis aries GN=SERPINA7 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 58/216 (26.85%), Postives = 98/216 (45.37%), Query Frame = 2
Query:   29 IVSRESSLQSMDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLN-GGSIKVPFM 670
            I S  S  Q+  + +  S   D A +L + V + E  D N+ FSP SI   L+++S G+   T  Q+L  L  + +D  +         ++ +   P     L + N ++I K L     F   V N+Y+      DF   +A   +E N   E++T G +  ++    +  +T  +  N L FK  W   FD SKT++    L++   +++VP M
Sbjct:   26 ITSCLSPQQNATLYKMSSINADFAFNLYRKVTV-ETPDQNIFFSPVSISAGLAMLSLGACSSTQTQILESLGFNLTDTPMAEIQQGFQHLICSLNFPKKELELQMGNALFIGKQLKPLEKFLDDVKNLYETEVFSTDFSNVSA-AQQEINSHVERQTKGKIVGLIQ--DLKPNTITVLVNYLCFKAQWANPFDPSKTEEGSSFLVDKTTTVQVPMM 237          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: CBG_RAT (Corticosteroid-binding globulin OS=Rattus norvegicus GN=Serpina6 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 47/180 (26.11%), Postives = 90/180 (50.00%), Query Frame = 2
Query:  140 DSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSF-LKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQ--TKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            D N + SP SI + L+++S GS      Q L F L   S+ +++     L  ++    +   G  +++ N +++ + L LK++F   V   Y++ +  +DF+  TKA   S++ N   + +T G ++ V     +D+    I  N ++ +G W   F    T++ DF++    ++KVP M
Sbjct:   55 DKNTLISPVSISMALAMVSLGSAQTQSLQSLGFNLTETSEAEIHQSFQYLNYLLKQSDT---GLEMNMGNAMFLLQKLKLKDSFLADVKQYYESEALAIDFEDWTKA---SQQINQHVKDKTQGKIEHVF--SDLDSPASFILVNYIFLRGIWELPFSPENTREEDFYVNETSTVKVPMM 226          
The following BLAST results are available for this feature:
BLAST of FC921282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
IC1_HUMAN3.855e-1128.71Plasma protease C1 inhibitor OS=Homo sapiens GN=SE... [more]
CBG_MOUSE3.855e-1124.29Corticosteroid-binding globulin OS=Mus musculus GN... [more]
THBG_SHEEP6.575e-1126.85Thyroxine-binding globulin OS=Ovis aries GN=SERPIN... [more]
CBG_RAT8.587e-1126.11Corticosteroid-binding globulin OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionC32103B12EF RVDevelopN Citrus clementina cDNA clone C32103B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921282 ID=FC921282; Name=FC921282; organism=Citrus clementina; type=EST; length=706bp
GATCTAAAACTTGTCAGTCCGTTTCTTCATCGTTTCCAGAGAGAGTAGTT
TGCAGAGCATGGACGTACGCGAATCAATCAGCAACCAAACCGACGTCGCT
TTGTCTCTAACAAAGCACGTTGCCCTAACCGAAGCTAAAGACTCGAACCT
CGTCTTCTCGCCGTCATCGATCCACGTTCTGCTGAGCCTGATCTCGGCTG
GATCCAAGGGCCCCACTCTCGACCAGTTGCTCTCTTTTCTCAAGTCCAAA
TCCGACGACCAACTTAACACCTTCGCCTCCGAACTCGTCGCCGTCGTTTT
TGCCGACGGAAGTCCTAGCGGCGGGCCCCGCTTGTCCGTGGCCAATGGTG
TTTGGATTGATAAGTCACTTTCTCTCAAGAATACTTTCAAACAGGTTGTG
GACAACGTCTACAAGGCTGCTTCTAATCAAGTCGATTTCCAAACCAAGGC
TGCTGAAGTATCCAGAGAAGCGAACATGTGGGCTGAGAAGGAGACCAATG
GCCTTGTTAAAGAGGTTCTTCCTCCTGGTTCAGTTGACAATTCAACCAGG
CTCATCTTTGCAAATGCACTATACTTCAAAGGAGCTTGGAATGAAACATT
TGATTCATCAAAGACAAAAGACTATGACTTTCACCTTCTCAATGGAGGCT
CCATTAAAGTGCCGTTCATGACTAGCAAGAAGAATCAGTTTGTGAGTGCC
TTTGAT
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