FC921282

Overview
NameFC921282
Unique NameFC921282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPA3M_MOUSE (Serine protease inhibitor A3M OS=Mus musculus GN=Serpina3m PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 65/204 (31.86%), Postives = 105/204 (51.47%), Query Frame = 2
Query:   80 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSK 679
            S  TD A SL K + L    D N+VFSP SI   L+L+S G+KG TL+++L  LK      S+  ++     L+  +     P    ++++ N ++I+K L +   F +    +Y+  +   DFQ K  E     N +   +T G++KE++    +D  T ++  N +YFKG W  +FD   T + +F+L    S+KVP M  K
Sbjct:   49 SINTDFAFSLYKELVLKNP-DKNIVFSPLSISAALALVSLGAKGNTLEEILEGLKFNLTETSEADIHQGFGHLLQRL---SQPEDQDQINIGNAMFIEKDLQILAEFHEKARALYQTEAFTADFQ-KPTEAKNLINDYVSNQTQGMIKELI--SELDTDTLMVLVNYIYFKGKWKISFDPQDTFESEFYLDEKRSVKVPMMKMK 245          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: ANT3_SHEEP (Antithrombin-III OS=Ovis aries GN=SERPINC1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 58/196 (29.59%), Postives = 98/196 (50.00%), Query Frame = 2
Query:   98 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            A +  +H+A ++  + N+  SP SI    ++   G+   TL QL+   K      K+ DQ++ F ++L   ++   + S    L  AN ++ DKS++   T++ + + VY A    +DF+  A +     N W   +T G + +V+PP ++D  T L+  N +YFKG W   F    TK   F+  +G S  VP M
Sbjct:   92 ATAFYQHLADSKNNNDNIFLSPLSISTAFAMTKLGACNNTLKQLMEVFKFDTISEKTSDQIHFFFAKLNCRLYRKANKSS--ELVSANRLFGDKSITFNETYQDISEVVYGAKLQPLDFKGNAEQSRLTINQWISNKTEGRITDVIPPQAIDEFTVLVLVNTIYFKGLWKSKFSPENTKKELFYKADGESCSVPMM 285          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPA3K_MOUSE (Serine protease inhibitor A3K OS=Mus musculus GN=Serpina3k PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 65/205 (31.71%), Postives = 107/205 (52.20%), Query Frame = 2
Query:   80 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSK 679
            S  TD A SL K +AL    D+N+VFSP SI   L+L+S G+KG T++++L  LK     +   D    F + L ++      P    ++++ N ++I+K L +   F +    +Y+  +   DFQ +  E     N +   +T G++KE++    +D  T ++  N +YFKG W  +FD   T + +F+L    S+KVP M  K
Sbjct:   50 SVNTDFAFSLYKKLALKNP-DTNIVFSPLSISAALALVSLGAKGKTMEEILEGLKFNLTETPEADIHQGFGNLLQSL----SQPEDQDQINIGNAMFIEKDLQILAEFHEKTRALYQTEAFTADFQ-QPTEAKNLINDYVSNQTQGMIKELI--SELDERTLMVLVNYIYFKGKWKISFDPQDTFESEFYLDEKRSVKVPMMKMK 246          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: ANT3_MOUSE (Antithrombin-III OS=Mus musculus GN=Serpinc1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 57/196 (29.08%), Postives = 99/196 (50.51%), Query Frame = 2
Query:   98 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            A +  +H+A ++  + N+  SP SI    ++   G+   TL QL+   K      K+ DQ++ F ++L   ++   + S    L  AN ++ DKSL+   +++ V + VY A    +DF+    +     N W   +T G +K+V+P G+++  T L+  N +YFKG W   F    T+   F+ ++G S  VP M
Sbjct:   92 ATNFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLKQLMEVFKFDTISEKTSDQIHFFFAKLNCRLYRKANKSSD--LVSANRLFGDKSLTFNESYQDVSEVVYGAKLQPLDFKENPEQSRVTINNWVANKTEGRIKDVIPQGAINELTALVLVNTIYFKGLWKSKFSPENTRKEPFYKVDGQSCPVPMM 285          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPB6_MACFA (Serpin B6 OS=Macaca fascicularis GN=SERPINB6 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 61/181 (33.70%), Postives = 96/181 (53.04%), Query Frame = 2
Query:   98 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPT---LDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDF 631
            AL+L K +    +K  N+ FSP S+   L+++  G+KG T   + Q+LSF KS     ++     L+  V   G+      L  AN ++ +KS    ++F+      Y+A   ++DF +   +  +  N W  ++T G + E+L PGSVD  TRL+  NA+YFKG WNE FD   T++  F
Sbjct:   12 ALNLLKTLGKDNSK--NVFFSPMSMSCALAMVYMGAKGNTAAQMAQVLSFNKSGGGGDIHQGFQSLLTEVNKTGTQY---LLRTANRLFGEKSCDFLSSFRDSCQKFYQAEMEELDFISAVEKSRKHINSWVAEKTEGKIAELLSPGSVDPLTRLVLVNAVYFKGNWNEQFDKENTEERRF 187          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SERA_MANSE (Alaserpin OS=Manduca sexta PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 59/180 (32.78%), Postives = 95/180 (52.78%), Query Frame = 2
Query:  146 NLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKN 685
            N+V S  S+   L  ++  S G + D+LL  L   +D+      ++L   V A      G  L +A+ +++ K L L + F  V  +V+ +    VDF  K+ E +   N W E +TN  +K ++ P ++D +TR +  NA+YFKG+W + F   +T D DFH+    +IKVP M  KK+
Sbjct:   48 NVVLSAFSVLPPLGQLALASVGESHDELLRALALPNDNVTKDVFADLNRGVRA----VKGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDF-VKSVEAAGAINKWVEDQTNNRIKNLVDPDALDETTRSVLVNAIYFKGSWKDKFVKERTMDRDFHVSKDKTIKVPTMIGKKD 222          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPB9_HUMAN (Serpin B9 OS=Homo sapiens GN=SERPINB9 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 56/189 (29.63%), Postives = 94/189 (49.74%), Query Frame = 2
Query:   71 ESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHL 637
            E++SN +         +   +    N+  SP SI   L+++  G+KG T  Q+   L   +++ ++     L+  V   G+      L  AN ++ +K+    +TFK+     Y A   ++ F   A E  +  N W  K+T G ++E+LP  S+D  TRL+  NA+YFKG WNE FD + T++  F +
Sbjct:    2 ETLSNASGTFAIRLLKILCQDNPSHNVFCSPVSISSALAMVLLGAKGNTATQMAQALSLNTEEDIHRAFQSLLTEVNKAGTQY---LLRTANRLFGEKTCQFLSTFKESCLQFYHAELKELSFIRAAEESRKHINTWVSKKTEGKIEELLPGSSIDAETRLVLVNAIYFKGKWNEPFDETYTREMPFKI 187          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPB10_SORAR (Serpin B10 OS=Sorex araneus GN=SERPINB10 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 60/225 (26.67%), Postives = 106/225 (47.11%), Query Frame = 2
Query:   71 ESISNQTD-VALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSD-------------------DQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKN 685
            +S++N  +  AL  +K +A T+ +  N+ FSP  I   L+++  G+KG T  Q+   L+  +D                   DQ+         ++    +PS    L  ANG++ +K+    N + + +   + A    V+F   + ++ ++ N W E +T G +  +LP  +VD++T+++  NALYFKG W   F    T +  F +    S  V  M+ KKN
Sbjct:    2 DSLANSINQFALEFSKKLAETD-EGKNIFFSPWGISTTLAMVYLGTKGTTATQMAQVLQFDTDQDVKSSPENEKKRKVDLNSDQVGEIHFGFQKLISEINNPSNTYVLKTANGIYGEKTYPFHNKYIEDIKTYFGAKPQSVNFVEDSDQIRKDINSWVESQTEGKIPNLLPDDAVDSATKMVLVNALYFKGLWEHQFSVQDTTEKPFRINKTSSKPVQMMSMKKN 225          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPB6_PONAB (Serpin B6 OS=Pongo abelii GN=SERPINB6 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 59/178 (33.15%), Postives = 96/178 (53.93%), Query Frame = 2
Query:   98 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPT---LDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKD 622
            AL+L K +    +K  N+ FSP S+   L+++  G+KG T   + Q+LSF KS S   ++     L+  V   G+      L  AN ++ +KS    ++F+      Y+A   ++DF +   +  +  N W  ++T G + E+L PGSVD  TRL+  NA+YF+G W+E FD   T++
Sbjct:   12 ALNLLKTLGKDNSK--NVFFSPMSMSCALAMVYMGAKGNTAAQMAQVLSFNKSGSGGDIHQGFQSLLTEVNKTGTQY---LLRTANRLFGEKSCDFLSSFRDSCQKFYQAEMEELDFISAVEKSRKHINTWVAEKTEGKIAELLSPGSVDPLTRLVLVNAVYFRGNWDEQFDKENTEE 184          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPA3F_MOUSE (Serine protease inhibitor A3F OS=Mus musculus GN=Serpina3f PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 65/214 (30.37%), Postives = 109/214 (50.93%), Query Frame = 2
Query:   41 ESSLQSMDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            + ++ S+D     S+ TD A SL K + L    D N+VFSP SI   L+L+S G+K  TL ++L  LK       +  ++     L+ ++     P    ++S  + ++I+K L +   FK+    +Y+A +   DFQ +  E ++  N +   +T G +KE++    +D  T ++  N +YFKG W   FD   T   +F+L    S+KVP M
Sbjct:   26 QENITSVDSLTLASSNTDFAFSLYKELVLKNP-DENVVFSPFSICTALTLLSLGAKSNTLKEILEGLKFNLTETPEPDIHQGFRYLLDLL---SQPGNQVQISTGSALFIEKHLQILAEFKEKARALYQAEAFTADFQ-QPLEATKLINDYVSNQTQGKIKELI--SDLDKRTLMVLVNYIYFKGKWEMPFDPDDTCKSEFYLDENRSVKVPMM 232          
The following BLAST results are available for this feature:
BLAST of FC921282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
SPA3M_MOUSE1.412e-2131.86Serine protease inhibitor A3M OS=Mus musculus GN=S... [more]
ANT3_SHEEP1.844e-2129.59Antithrombin-III OS=Ovis aries GN=SERPINC1 PE=2 SV... [more]
SPA3K_MOUSE2.409e-2131.71Serine protease inhibitor A3K OS=Mus musculus GN=S... [more]
ANT3_MOUSE7.008e-2129.08Antithrombin-III OS=Mus musculus GN=Serpinc1 PE=1 ... [more]
SPB6_MACFA9.153e-2133.70Serpin B6 OS=Macaca fascicularis GN=SERPINB6 PE=2 ... [more]
SERA_MANSE1.561e-2032.78Alaserpin OS=Manduca sexta PE=1 SV=1[more]
SPB9_HUMAN2.039e-2029.63Serpin B9 OS=Homo sapiens GN=SERPINB9 PE=1 SV=1[more]
SPB10_SORAR2.039e-2026.67Serpin B10 OS=Sorex araneus GN=SERPINB10 PE=3 SV=1[more]
SPB6_PONAB4.543e-2033.15Serpin B6 OS=Pongo abelii GN=SERPINB6 PE=2 SV=1[more]
SPA3F_MOUSE5.933e-2030.37Serine protease inhibitor A3F OS=Mus musculus GN=S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32103B12EF RVDevelopN Citrus clementina cDNA clone C32103B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921282 ID=FC921282; Name=FC921282; organism=Citrus clementina; type=EST; length=706bp
GATCTAAAACTTGTCAGTCCGTTTCTTCATCGTTTCCAGAGAGAGTAGTT
TGCAGAGCATGGACGTACGCGAATCAATCAGCAACCAAACCGACGTCGCT
TTGTCTCTAACAAAGCACGTTGCCCTAACCGAAGCTAAAGACTCGAACCT
CGTCTTCTCGCCGTCATCGATCCACGTTCTGCTGAGCCTGATCTCGGCTG
GATCCAAGGGCCCCACTCTCGACCAGTTGCTCTCTTTTCTCAAGTCCAAA
TCCGACGACCAACTTAACACCTTCGCCTCCGAACTCGTCGCCGTCGTTTT
TGCCGACGGAAGTCCTAGCGGCGGGCCCCGCTTGTCCGTGGCCAATGGTG
TTTGGATTGATAAGTCACTTTCTCTCAAGAATACTTTCAAACAGGTTGTG
GACAACGTCTACAAGGCTGCTTCTAATCAAGTCGATTTCCAAACCAAGGC
TGCTGAAGTATCCAGAGAAGCGAACATGTGGGCTGAGAAGGAGACCAATG
GCCTTGTTAAAGAGGTTCTTCCTCCTGGTTCAGTTGACAATTCAACCAGG
CTCATCTTTGCAAATGCACTATACTTCAAAGGAGCTTGGAATGAAACATT
TGATTCATCAAAGACAAAAGACTATGACTTTCACCTTCTCAATGGAGGCT
CCATTAAAGTGCCGTTCATGACTAGCAAGAAGAATCAGTTTGTGAGTGCC
TTTGAT
back to top