FC921282

Overview
NameFC921282
Unique NameFC921282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: ANT3_PONAB (Antithrombin-III OS=Pongo abelii GN=SERPINC1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 55/196 (28.06%), Postives = 97/196 (49.49%), Query Frame = 2
Query:   98 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            A +  +H+A ++  + N+  SP SI    ++   G+   TL QL+   K      K+ DQ++ F ++L   ++   + S   +L  AN ++ DKSL+   T++ + + VY A    +DF+  A +     N W   +T G + +V+PP +++  T L+  N +YFKG W   F    T+   F+  +G S     M
Sbjct:   91 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLNCRLYRKANKSS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRITDVIPPEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMM 284          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPB6_HUMAN (Serpin B6 OS=Homo sapiens GN=SERPINB6 PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 58/178 (32.58%), Postives = 96/178 (53.93%), Query Frame = 2
Query:   98 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPT---LDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKD 622
            AL+L K +    +K  N+ FSP S+   L+++  G+KG T   + Q+LSF KS     ++     L+  V   G+      L +AN ++ +KS    ++F+      Y+A   ++DF +   +  +  N W  ++T G + E+L PGSVD  TRL+  NA+YF+G W+E FD   T++
Sbjct:   12 ALNLLKTLGKDNSK--NVFFSPMSMSCALAMVYMGAKGNTAAQMAQILSFNKSGGGGDIHQGFQSLLTEVNKTGTQY---LLRMANRLFGEKSCDFLSSFRDSCQKFYQAEMEELDFISAVEKSRKHINTWVAEKTEGKIAELLSPGSVDPLTRLVLVNAVYFRGNWDEQFDKENTEE 184          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPA3A_MOUSE (Serine protease inhibitor A3A OS=Mus musculus GN=Serpina3a PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 68/206 (33.01%), Postives = 106/206 (51.46%), Query Frame = 2
Query:   80 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKK 682
            S  TD A SL K +AL E    N+VFSP SI   L+L+S G+KG TL+++L  LK     +   D    F   L  ++     P    +++  N ++IDK L +   FK+    +YKA +   DFQ +  E ++  N +  K+T G +KE++    +  +T +   N L F+G WN TFD   T   +F L    ++ VP M +++
Sbjct:   51 SINTDFAFSLYKKLAL-ENPHKNIVFSPLSISAALALMSLGAKGNTLEEILEGLKFNLPETPEADIHQNFGHLLQMLI----QPENQVQINAGNALFIDKHLQILTEFKEKARALYKAEAFTTDFQ-RPREATKLINDYVRKQTQGKIKELV--SDLHRNTSMALVNFLNFQGFWNVTFDPEDTFLGNFTLDRKRTVNVPMMKTEE 248          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: NEUS_RAT (Neuroserpin OS=Rattus norvegicus GN=Serpini1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 59/224 (26.34%), Postives = 113/224 (50.45%), Query Frame = 2
Query:   47 SLQSMDVRESISNQT--DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQL---LSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAF 703
            +LQS+    +  ++T  + ++++  H+  T  +D N++FSP SI + + ++  G++G TL ++   + +   KS ++ + F  +  ++V A+    G   + +AN +++     +   F Q++   + A  N VDF    A V+   N W E  TN L+K+++ PG  D  T L   NA+YFKG W   F    T+ + F   +   +++P M  +   +   F
Sbjct:   11 ALQSLVTGAAFPDETIAEWSVNVYNHLRAT-GEDENILFSPLSIALAMGVMELGAQGSTLKEIRHSMGYESLKSGEEFS-FLRDFSSMVSAE---EGQYVMKIANSLFVQNGFHINEEFLQMMKMYFNAEVNHVDFSENVA-VANYINKWVENYTNSLLKDLVSPGDFDAVTHLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQQGEFYYGEF 228          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: ILEUA_RAT (Leukocyte elastase inhibitor A OS=Rattus norvegicus GN=Serpinb1a PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 60/192 (31.25%), Postives = 90/192 (46.88%), Query Frame = 2
Query:  116 HVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQF 691
            H     +   N+ FSP SI   L+++  G+KG T  QL       S + +++    L A V   G+      L +AN ++ +K+ +    F      +Y A    VDFQ  + +  +E N W + +T G + E+L  G VD+ T+L+  NA+YFKG W E F    T D  F L    +  V  M  KK  F
Sbjct:   17 HTLSESSPTGNIFFSPFSISSALAMVFLGTKGTTAAQLSKTFHFDSVEDVHSRFQSLNAEVSKRGASH---TLKLANRLYGEKTYNFLPEFLTSTQKMYGADLAPVDFQHASEDARKEINQWVKGQTEGKIPELLAVGVVDSMTKLVLVNAIYFKGMWEEKFMKQDTTDAPFRLNKKNTKSVKMMYQKKKFF 205          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: ILEUB_MOUSE (Leukocyte elastase inhibitor B OS=Mus musculus GN=Serpinb1b PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 59/189 (31.22%), Postives = 92/189 (48.68%), Query Frame = 2
Query:  116 HVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKK 682
            H     +   N+ FSP SI   L+++  G+KG T  QL   L   S + +++    L A V   G+      L +AN ++ +K+ +    F      +Y A    VDFQ  + +  +E N W + +T G + E+L  G VD+ T+L+  NA+YFKG W E F + +T +  F L    +  V  M  KK
Sbjct:   17 HTLKESSPTGNIFFSPFSISSSLAMVFLGAKGSTAAQLSKTLHFDSVEDIHSCFQSLTAEVSKLGASH---TLKLANRLYGEKTYNFLPEFLASTQKMYSADLAAVDFQHASEDARKEINQWVKGQTEGKIPELLAKGVVDSMTKLVLVNAIYFKGIWEEQFMTRETINAPFRLNKKDTKTVKMMYQKK 202          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPI3_LONON (Serine protease inhibitor 3/4 (Fragment) OS=Lonomia obliqua PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 57/181 (31.49%), Postives = 94/181 (51.93%), Query Frame = 2
Query:  131 EAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDF-QTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            E  + N+VFS  S+   L+ ++  S G + D+L S +   +++      ++L   +        G  L +AN ++I     L + F  V  +V+ +   ++DF Q K A  ++  N W E  TN  +K+++ P S+D+ TR +  NALYFKG+W   FD   T D  FH+ N  +I+VP M
Sbjct:   48 ENPNKNIVFSAFSVMSPLAQLAIASAGESRDELFSAIGFPNENVTKAVFTDLNREL----KSVKGVTLKIANKIYIANGFELNDQFAVVSKDVFNSEVQKLDFAQNKVA--AKTINTWVEDHTNNRIKDLVDPNSLDDYTRAVLVNALYFKGSWKNKFDKESTIDRPFHVDNTKTIQVPTM 222          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: PAI1_MUSVI (Plasminogen activator inhibitor 1 OS=Mustela vison GN=SERPINE1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 66/235 (28.09%), Postives = 114/235 (48.51%), Query Frame = 2
Query:   11 LSVRFFIVSRESSLQSMDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-----LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREA---NMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQF 691
            L++   +V  E+S   +    +    TD  + + K VA   +KD N+VFSP  +  +L+++   + G T  Q+   ++ + D++     L     EL+        P     +S A+ +++ + L L + F      +++    QVDF    +EV R     N W ++ T G++ ++L  G+VD  TRL+  NALYF G W   F  S T    FH  +G ++ VP M ++ N+F
Sbjct:    8 LALGLALVFGEASASYLHETRAAELATDFGVKVFKQVAQA-SKDRNMVFSPYGLASVLAMLQLTTAGETRQQIQEAMRFQIDEKGMAPALRQLYKELMG-------PWNKDEISTADAIFVQRDLKLVHGFMPYFFRLFQTTVKQVDF----SEVERARFIINDWVKRHTKGMIGDLLGRGTVDQLTRLMLVNALYFNGQWKTPFPKSGTHHRLFHKSDGSTVSVPMM-AQTNKF 229          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: A1AT5_MOUSE (Alpha-1-antitrypsin 1-5 OS=Mus musculus GN=Serpina1e PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 66/212 (31.13%), Postives = 105/212 (49.53%), Query Frame = 2
Query:   53 QSMDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMT 673
            QS    E  +N  D A+SL + + + ++  SN+ FSP SI    +++S GSKG T  Q+L  L+     +   D  N+F   L  +      P    +LS  NG++++  L L   F +   N Y+A    V+F  ++ E  +  N + EK T G + E +    ++  T  + AN + FKG W + FD   TK  +FH+    ++KVP MT
Sbjct:   37 QSPASHEIATNLGDFAISLYREL-VHQSNTSNIFFSPVSIATAFAMLSLGSKGDTHTQILEGLQFNLTQTSEADIHNSFQHLLQTL----NRPDSELQLSTGNGLFVNNDLKLVEKFLEEAKNHYQAEVFSVNF-AESEEAKKVINDFVEKGTQGKIVEAVK--KLEQDTVFVLANYILFKGKWKKPFDPENTKQAEFHVDESTTVKVPMMT 240          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPI24_APOSY (Serine proteinase inhibitor 2.4 OS=Apodemus sylvaticus PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 65/201 (32.34%), Postives = 106/201 (52.74%), Query Frame = 2
Query:   80 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            S  TD A SL K +AL    D N+VFSP SI   L+++S G+K  TL ++L  LK       +  ++     L+ ++   G      ++++A  ++I+K L +   F++ V ++Y+A +   DFQ +A E  +  N +  KET G ++E+L    +   T ++  N +YFKG W   FD   T   +F+L    S+KVP M
Sbjct:   49 SINTDFAFSLYKELALKNP-DKNIVFSPLSISAALAIVSLGAKCNTLQEILEGLKFNLTETPEADIHLGFRHLLHMLSQSGKEE---QINIAVSMFIEKHLQILAEFQEKVRSLYQAEAFTADFQ-QADEARKFINDYVRKETQGKIQELL--SDLVERTSMVLVNYIYFKGKWKMPFDPRVTLKSEFYLDEKRSVKVPMM 242          
The following BLAST results are available for this feature:
BLAST of FC921282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
ANT3_PONAB5.933e-2028.06Antithrombin-III OS=Pongo abelii GN=SERPINC1 PE=2 ... [more]
SPB6_HUMAN7.749e-2032.58Serpin B6 OS=Homo sapiens GN=SERPINB6 PE=1 SV=3[more]
SPA3A_MOUSE1.322e-1933.01Serine protease inhibitor A3A OS=Mus musculus GN=S... [more]
NEUS_RAT1.726e-1926.34Neuroserpin OS=Rattus norvegicus GN=Serpini1 PE=2 ... [more]
ILEUA_RAT1.726e-1931.25Leukocyte elastase inhibitor A OS=Rattus norvegicu... [more]
ILEUB_MOUSE2.255e-1931.22Leukocyte elastase inhibitor B OS=Mus musculus GN=... [more]
SPI3_LONON2.945e-1931.49Serine protease inhibitor 3/4 (Fragment) OS=Lonomi... [more]
PAI1_MUSVI2.945e-1928.09Plasminogen activator inhibitor 1 OS=Mustela vison... [more]
A1AT5_MOUSE2.945e-1931.13Alpha-1-antitrypsin 1-5 OS=Mus musculus GN=Serpina... [more]
SPI24_APOSY3.846e-1932.34Serine proteinase inhibitor 2.4 OS=Apodemus sylvat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32103B12EF RVDevelopN Citrus clementina cDNA clone C32103B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921282 ID=FC921282; Name=FC921282; organism=Citrus clementina; type=EST; length=706bp
GATCTAAAACTTGTCAGTCCGTTTCTTCATCGTTTCCAGAGAGAGTAGTT
TGCAGAGCATGGACGTACGCGAATCAATCAGCAACCAAACCGACGTCGCT
TTGTCTCTAACAAAGCACGTTGCCCTAACCGAAGCTAAAGACTCGAACCT
CGTCTTCTCGCCGTCATCGATCCACGTTCTGCTGAGCCTGATCTCGGCTG
GATCCAAGGGCCCCACTCTCGACCAGTTGCTCTCTTTTCTCAAGTCCAAA
TCCGACGACCAACTTAACACCTTCGCCTCCGAACTCGTCGCCGTCGTTTT
TGCCGACGGAAGTCCTAGCGGCGGGCCCCGCTTGTCCGTGGCCAATGGTG
TTTGGATTGATAAGTCACTTTCTCTCAAGAATACTTTCAAACAGGTTGTG
GACAACGTCTACAAGGCTGCTTCTAATCAAGTCGATTTCCAAACCAAGGC
TGCTGAAGTATCCAGAGAAGCGAACATGTGGGCTGAGAAGGAGACCAATG
GCCTTGTTAAAGAGGTTCTTCCTCCTGGTTCAGTTGACAATTCAACCAGG
CTCATCTTTGCAAATGCACTATACTTCAAAGGAGCTTGGAATGAAACATT
TGATTCATCAAAGACAAAAGACTATGACTTTCACCTTCTCAATGGAGGCT
CCATTAAAGTGCCGTTCATGACTAGCAAGAAGAATCAGTTTGTGAGTGCC
TTTGAT
back to top