FC921282

Overview
NameFC921282
Unique NameFC921282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: ANT3_HUMAN (Antithrombin-III OS=Homo sapiens GN=SERPINC1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 54/196 (27.55%), Postives = 96/196 (48.98%), Query Frame = 2
Query:   98 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            A +  +H+A ++  + N+  SP SI    ++   G+   TL QL+   K      K+ DQ++ F ++L   ++   + S   +L  AN ++ DKSL+   T++ + + VY A    +DF+  A +     N W   +T G + +V+P  +++  T L+  N +YFKG W   F    T+   F+  +G S     M
Sbjct:   91 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLNCRLYRKANKSS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMM 284          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: A1AT1_MOUSE (Alpha-1-antitrypsin 1-1 OS=Mus musculus GN=Serpina1a PE=1 SV=4)

HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19
Identity = 64/211 (30.33%), Postives = 105/211 (49.76%), Query Frame = 2
Query:   53 QSMDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMT 673
            QS    E  +N  D A+SL + + + ++  SN+ FSP SI    +++S GSKG T  Q+L  L+      S+  ++     L+  +     P    +LS  NG++++  L L   F +   N Y+A    V+F  ++ E  +  N + EK T G + E +    +D  T    AN + FKG W + FD   T++ +FH+    ++KVP MT
Sbjct:   37 QSPASHEIATNLGDFAISLYREL-VHQSNTSNIFFSPVSIATAFAMLSLGSKGDTHTQILEGLQFNLTQTSEADIHKSFQHLLQTL---NRPDSELQLSTGNGLFVNNDLKLVEKFLEEAKNHYQAEVFSVNF-AESEEAKKVINDFVEKGTQGKIAEAVK--KLDQDTVFALANYILFKGKWKKPFDPENTEEAEFHVDESTTVKVPMMT 240          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPB10_RHIFE (Serpin B10 OS=Rhinolophus ferrumequinum GN=SERPINB10 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 56/214 (26.17%), Postives = 95/214 (44.39%), Query Frame = 2
Query:   98 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFA-------------------SELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKK 682
            AL  +K +A   A+  N+ FSP  I   L+++  G++G T  Q+   L+   D     F                    S+   ++    +PS    L  ANG++ +K+    N + + +   +      V+F     +   E N W E +T G +  +LP  +VD++TR++  NA+YFKG W   F +  T++  F +    S  V  M+ KK
Sbjct:   12 ALEFSKKLA-ESAEGKNIFFSPWGISTSLAMVYLGTRGTTAAQIAQVLQFNRDQDSKFFPESEKKRKMDFNSRKVEEIRSDFQTLISEINNPSNAYVLKTANGIYGEKTYPFHNKYLEDMKTYFGVEPQSVNFLEAPDQTRNEINSWVESQTQGKILNLLPDDAVDSATRMVLVNAIYFKGIWEHQFSARDTREKPFRINKNTSKPVQMMSMKK 224          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: A1AT_RAT (Alpha-1-antiproteinase OS=Rattus norvegicus GN=Serpina1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 62/210 (29.52%), Postives = 105/210 (50.00%), Query Frame = 2
Query:   53 QSMDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSK----SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            QS   R+  SN  D A SL + + + ++  SN+ FSP SI    +++S GSKG T  Q+L  L+       +  ++     L+  +     P    +L+  NG++++K+L L   F + V N Y + +  V+F   + E  +  N + EK T G + +++    +D  T     N ++FKG W   F+   T+D DFH+    ++KVP M
Sbjct:   37 QSPTYRKISSNLADFAFSLYREL-VHQSNTSNIFFSPMSITTAFAMLSLGSKGDTRKQILEGLEFNLTQIPEADIHKAFHHLLQTL---NRPDSELQLNTGNGLFVNKNLKLVEKFLEEVKNNYHSEAFSVNF-ADSEEAKKVINDYVEKGTQGKIVDLMK--QLDEDTVFALVNYIFFKGKWKRPFNPEHTRDADFHVDKSTTVKVPMM 239          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: A1AT3_MOUSE (Alpha-1-antitrypsin 1-3 OS=Mus musculus GN=Serpina1c PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 64/211 (30.33%), Postives = 105/211 (49.76%), Query Frame = 2
Query:   53 QSMDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMT 673
            QS    E  +N  D A+SL + + + ++  SN+ FSP SI    +++S GSKG T  Q+L  L+      S+  ++     L+  +     P    +LS  NG++++  L L   F +   N Y+A    V+F  ++ E  +  N + EK T G + E +    +D  T    AN + FKG W + FD   T++ +FH+    ++KVP MT
Sbjct:   37 QSPASHEIATNLGDFAISLYREL-VHQSNTSNIFFSPVSIATAFAMLSLGSKGDTHTQILEGLQFNLTQTSEADIHKSFQHLLQTL---NRPDSELQLSTGNGLFVNNDLKLVEKFLEEAKNHYQAEVFSVNF-AESEEAKKVINDFVEKGTQGKIVEAVK--KLDQDTVFALANYILFKGKWKKPFDPENTEEAEFHVDESTTVKVPMMT 240          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: Y2613_METAC (Uncharacterized serpin-like protein MA_2613/MA_2612 OS=Methanosarcina acetivorans GN=MA_2613/MA_2612 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 53/192 (27.60%), Postives = 90/192 (46.88%), Query Frame = 2
Query:  110 TKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKN 685
            +K V L   + +N++FSP S+   +++   G++G   +Q+ +     +++ +  F   L        S S G  L  AN +W+ +   +K  +   V N Y++    +DF  K  E     N W E +T+  +K+++P GS+ + TRLI  NA+YF G W   FD   T    F+      + V  M    N
Sbjct:   51 SKLVQLESREKNNILFSPYSVSAAMAICYEGTEGTAKEQISNVFYFPANNTV--FKVRLKETNDKVYSGSDGYELENANAIWVQEEYPVKEEYIFNVKNYYRSEVTNLDFVEKPDESRDAINEWVEDKTDRKIKDIVPKGSITDDTRLILTNAIYFNGKWEHEFDKKMTSKKTFYPTKREEVSVDMMYISSN 240          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPB10_OTOGA (Serpin B10 OS=Otolemur garnettii GN=SERPINB10 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 62/224 (27.68%), Postives = 103/224 (45.98%), Query Frame = 2
Query:   80 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDD--------------QLNTFASELVAVVFADG-----SPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQFV 694
            S+ +  AL  +K +A + A   N+ FSP SI   L+++  G++G T  ++   L+   D               + N   +E +   F         P+    L  ANG++ +K+    N + + V   + A    V+F   + ++ +E N W E +T G +  +LP  SVD++TR+I  NALYFKG W   F +  T +  F +    S  V  M+ K+   V
Sbjct:    6 SSISQFALEFSKELAASAA-GKNIFFSPWSISSALAMVYLGARGTTAVEMAKVLQLNRDQADKTGPESEKKRKMEFNLGKAEEIHCDFQTLISEILKPTDAHVLKTANGIYGEKTYPFHNKYLEEVKTYFGAEPQSVNFVEASDQIRKEINSWVESQTQGKILNLLPDDSVDSTTRMILVNALYFKGTWEHQFLAQNTTEKPFRINETTSKPVQMMSMKEKLHV 228          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: PAI1_BOVIN (Plasminogen activator inhibitor 1 OS=Bos taurus GN=SERPINE1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 64/235 (27.23%), Postives = 113/235 (48.09%), Query Frame = 2
Query:   11 LSVRFFIVSRESSLQSMDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-----LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSRE---ANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQF 691
            L++   ++  E S        + S  TD  + + + V +  +KD N+VFSP  +  +L+++   + G T  Q+   ++ K +++      +    EL+        P     +S A+ +++ + L L + F      +++    QVDF    +EV R     N W ++ T G++ ++L  G+VD  TRL+  NALYF G W   F  S T    FH  +G +I VP M ++ N+F
Sbjct:   10 LALGLALIFGEGSASYQPQSAAASLATDFGVKVFQQV-VRASKDRNVVFSPYGVASVLAMLQLTTGGETRQQIQEAMQFKIEEKGMAPAFHRLYKELMG-------PWNKDEISTADAIFVQRDLELVHGFMPNFFRLFRTTVKQVDF----SEVERARFIVNDWVKRHTKGMISDLLGEGAVDQLTRLVLVNALYFNGQWKMPFPESNTHHRLFHKSDGSTISVPMM-AQTNKF 231          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: NEUS_HUMAN (Neuroserpin OS=Homo sapiens GN=SERPINI1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 60/222 (27.03%), Postives = 105/222 (47.30%), Query Frame = 2
Query:   50 LQSMDVRESISNQTDVALSLTKHVAL-TEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQL---LSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAF 703
            LQSM    +   +    LS+  +  L    +D N++FSP SI + + ++  G++G T  ++   + +   K+ ++ + F  E   +V A  S      + +AN +++     +   F Q++   + AA N VDF    A V+   N W E  TN LVK+++ P   D +T L   NA+YFKG W   F    T+ + F   +   +++P M  +   +   F
Sbjct:   12 LQSMATGATFPEEAIADLSVNMYNRLRATGEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMGYDSLKNGEEFS-FLKEFSNMVTAKESQYV---MKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFSQNVA-VANYINKWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQQGEFYYGEF 228          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: ILEU_XENLA (Leukocyte elastase inhibitor OS=Xenopus laevis GN=serpinb1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 56/179 (31.28%), Postives = 89/179 (49.72%), Query Frame = 2
Query:  146 NLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKK 682
            NL FSP S+   L+++  G+KG T +Q+   L   +   L++    L A +  +        L++AN ++ +K+ +    F   V   Y A    VDF +   +  +E N W  ++T G + EVL  G+VD ST+L+  NA+YFKG W + F++  T D  F L       V  M  K+
Sbjct:   27 NLFFSPISLSTALAMVFLGTKGKTAEQMSKTLHFDAVKDLHSNFQTLNAEI--NKKDVSTYALNLANRLFGEKTFNFLPNFLSSVKKQYSADLGTVDFISALEDARKEINKWVSEQTKGKIPEVLSTGTVDRSTKLVLVNAIYFKGDWAKKFNAEHTTDMPFQLNKKEQKTVKMMYQKE 203          
The following BLAST results are available for this feature:
BLAST of FC921282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
ANT3_HUMAN5.023e-1927.55Antithrombin-III OS=Homo sapiens GN=SERPINC1 PE=1 ... [more]
A1AT1_MOUSE6.560e-1930.33Alpha-1-antitrypsin 1-1 OS=Mus musculus GN=Serpina... [more]
SPB10_RHIFE8.567e-1926.17Serpin B10 OS=Rhinolophus ferrumequinum GN=SERPINB... [more]
A1AT_RAT8.567e-1929.52Alpha-1-antiproteinase OS=Rattus norvegicus GN=Ser... [more]
A1AT3_MOUSE8.567e-1930.33Alpha-1-antitrypsin 1-3 OS=Mus musculus GN=Serpina... [more]
Y2613_METAC1.461e-1827.60Uncharacterized serpin-like protein MA_2613/MA_261... [more]
SPB10_OTOGA1.461e-1827.68Serpin B10 OS=Otolemur garnettii GN=SERPINB10 PE=3... [more]
PAI1_BOVIN1.461e-1827.23Plasminogen activator inhibitor 1 OS=Bos taurus GN... [more]
NEUS_HUMAN1.461e-1827.03Neuroserpin OS=Homo sapiens GN=SERPINI1 PE=1 SV=1[more]
ILEU_XENLA1.461e-1831.28Leukocyte elastase inhibitor OS=Xenopus laevis GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32103B12EF RVDevelopN Citrus clementina cDNA clone C32103B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921282 ID=FC921282; Name=FC921282; organism=Citrus clementina; type=EST; length=706bp
GATCTAAAACTTGTCAGTCCGTTTCTTCATCGTTTCCAGAGAGAGTAGTT
TGCAGAGCATGGACGTACGCGAATCAATCAGCAACCAAACCGACGTCGCT
TTGTCTCTAACAAAGCACGTTGCCCTAACCGAAGCTAAAGACTCGAACCT
CGTCTTCTCGCCGTCATCGATCCACGTTCTGCTGAGCCTGATCTCGGCTG
GATCCAAGGGCCCCACTCTCGACCAGTTGCTCTCTTTTCTCAAGTCCAAA
TCCGACGACCAACTTAACACCTTCGCCTCCGAACTCGTCGCCGTCGTTTT
TGCCGACGGAAGTCCTAGCGGCGGGCCCCGCTTGTCCGTGGCCAATGGTG
TTTGGATTGATAAGTCACTTTCTCTCAAGAATACTTTCAAACAGGTTGTG
GACAACGTCTACAAGGCTGCTTCTAATCAAGTCGATTTCCAAACCAAGGC
TGCTGAAGTATCCAGAGAAGCGAACATGTGGGCTGAGAAGGAGACCAATG
GCCTTGTTAAAGAGGTTCTTCCTCCTGGTTCAGTTGACAATTCAACCAGG
CTCATCTTTGCAAATGCACTATACTTCAAAGGAGCTTGGAATGAAACATT
TGATTCATCAAAGACAAAAGACTATGACTTTCACCTTCTCAATGGAGGCT
CCATTAAAGTGCCGTTCATGACTAGCAAGAAGAATCAGTTTGTGAGTGCC
TTTGAT
back to top