FC921282

Overview
NameFC921282
Unique NameFC921282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: ILEU_XENTR (Leukocyte elastase inhibitor OS=Xenopus tropicalis GN=serpinb1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 54/164 (32.93%), Postives = 84/164 (51.22%), Query Frame = 2
Query:  146 NLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHL 637
            N+ FSP SI   L+++  G++G T  Q+   L   +   L++    L A +      S    L++AN ++ +KS      F   V   Y A    VDF + A +  +E N W  ++T G + EVL  G+V++ T+L+  NA+YFKG W + F +  TKD  F L
Sbjct:   27 NVFFSPISISTALAMVLLGARGNTAQQISRILHFDAVKDLHSNFQTLNAEINKKNVSSYA--LNLANRLFGEKSFKFLPDFLSSVKKQYNADLGTVDFISAAEDARKEINTWVSEQTKGKIPEVLSAGAVNSFTKLVLVNAIYFKGDWAKKFKAEHTKDMPFQL 188          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: ALST_TAMSI (Alpha-1-antitrypsin-like protein CM55-ST OS=Tamias sibiricus PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 60/198 (30.30%), Postives = 105/198 (53.03%), Query Frame = 2
Query:   92 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFAD-----GSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            + ALS  + +A  ++  +N+ FSP SI   L+++S G+KG T  Q+L  L    D  L   A   +   F +       P+   +L+  NG++ID++L L + F + V ++Y + +   +F T   E  ++ N + EK T G + E+L    +D  T L   N ++FKG W + F+  +T++ DFH+    +++VP M
Sbjct:   51 EFALSFYRVLA-RQSNTTNIFFSPVSIATALAMLSLGTKGDTHTQILEGL----DFNLTEMAEADIHQGFQNLLQTLNRPNTQLQLTSGNGLFIDRNLKLLDKFLEDVKSLYHSEAFSTNF-TNTQEARQQINSYVEKGTQGKIVELLK--ELDRDTVLALVNYIFFKGKWKQPFNEEQTREKDFHVDEATTVRVPMM 240          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPB8_HUMAN (Serpin B8 OS=Homo sapiens GN=SERPINB8 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 56/174 (32.18%), Postives = 86/174 (49.43%), Query Frame = 2
Query:   98 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTK 619
            A+SL K +   E    N+ FSP SI   L+++  G+KG T  Q+   L    D  ++     L++ V   G+      L  AN ++ +K+      FK+     Y+A   ++ F     E  +  N W  ++T G + EVL  G+VD  T+L+  NA+YFKG WNE FD   T+
Sbjct:   12 AISLFKILG-EEDNSRNVFFSPMSISSALAMVFMGAKGSTAAQMSQALCLYKDGDIHRGFQSLLSEVNRTGTQY---LLRTANRLFGEKTCDFLPDFKEYCQKFYQAELEELSFAEDTEECRKHINDWVAEKTEGKISEVLDAGTVDPLTKLVLVNAIYFKGKWNEQFDRKYTR 181          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPB13_MOUSE (Serpin B13 OS=Mus musculus GN=Serpinb13 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 56/195 (28.72%), Postives = 91/195 (46.67%), Query Frame = 2
Query:  125 LTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASE-------------LVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            L +  D N+ FSP  I   + +I  G++G T  +L   L ++   + +   SE             L  ++      S    L ++N ++ +K+      +   V+  Y A+   VDF   A E  ++ N W E +TN  VK++ P GS+++ST+L+  N +YFKG W+  F    TK+ DF L    S  V  M
Sbjct:   19 LNKTNDGNVFFSPVGISTAIGMIILGTRGATASELQKVLYTEQGTESSRIKSEEEEIEKREEIHHQLQMLLTEISKFSNDYDLIISNRLFGEKTYLFLQKYIDYVEKYYHASLEPVDFVNAADESRKKINSWVESQTNVKVKDLFPEGSLNSSTKLVLINTVYFKGLWDREFKKEHTKEEDFWLNKNLSKPVQMM 213          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: PAI1_MOUSE (Plasminogen activator inhibitor 1 OS=Mus musculus GN=Serpine1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 63/222 (28.38%), Postives = 110/222 (49.55%), Query Frame = 2
Query:   56 SMDVRESIS--NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-----LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREA---NMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQF 691
            ++ +RES +    TD  + + + V +  +KD N+VFSP  +  +L+++   + G T  Q+   +  K +++     L   + EL+        P     +S A+ +++ + L L   F      +++    QVDF    +EV R     N W E+ T G++ ++L  G+VD  TRL+  NALYF G W   F  + T    FH  +G ++ VP M ++ N+F
Sbjct:   23 TLPLRESHTAHQATDFGVKVFQQV-VQASKDRNVVFSPYGVSSVLAMLQMTTAGKTRRQIQDAMGFKVNEKGTAHALRQLSKELMG-------PWNKNEISTADAIFVQRDLELVQGFMPHFFKLFQTMVKQVDF----SEVERARFIINDWVERHTKGMINDLLAKGAVDELTRLVLVNALYFSGQWKTPFLEASTHQRLFHKSDGSTVSVPMM-AQSNKF 231          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: NEUS_CHICK (Neuroserpin OS=Gallus gallus GN=SERPINI1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 59/222 (26.58%), Postives = 104/222 (46.85%), Query Frame = 2
Query:   50 LQSMDVRESISNQTDVALSLTKHVALTEAK-DSNLVFSPSSIHVLLSLISAGSKGPTLDQL---LSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAF 703
            L S   + +  ++T   LS+  +  L  A+ D N++F P SI + + +I  G+ G TL ++   L F   K+ ++  TF  +L  +   + S      L++AN +++     +   F Q+V   +KA    +DF   AA V+   N W E  TN ++K+ +        T L+  NA+YFKG W   F    T+ + F   +   +++P M  +   +   F
Sbjct:   12 LPSKAFKTNFPDETIAELSVNVYNQLRAAREDENILFCPLSIAIAMGMIELGAHGTTLKEIRHSLGFDSLKNGEEF-TFLKDLSDMATTEESHYV---LNMANSLYVQNGFHVSEKFLQLVKKYFKAEVENIDFSQSAA-VATHINKWVENHTNNMIKDFVSSRDFSALTHLVLINAIYFKGNWKSQFRPENTRTFSFTKDDETEVQIPMMYQQGEFYYGEF 228          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPB6_MOUSE (Serpin B6 OS=Mus musculus GN=Serpinb6 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 61/199 (30.65%), Postives = 92/199 (46.23%), Query Frame = 2
Query:   98 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFL-----KSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSK 679
            AL+L K   L E    N+  SP SI   L+++  G+KG T  Q+   L            ++     L+  V   G+      L  AN ++ DK+  L  +FK      Y+A   ++DFQ    E  +  N W  K+T   +KEVL PG+V++ T L+  NA+YFKG W + F+   T++  F +       V  M  K
Sbjct:   12 ALNLLK--ILGEDSSKNVFLSPMSISSALAMVFMGAKGTTASQMAQALALDKCSGNGGGDVHQGFQSLLTEVNKTGTQY---LLRTANRLFGDKTCDLLASFKDSCLKFYEAELEELDFQGATEESRQHINTWVAKKTEDKIKEVLSPGTVNSDTSLVLVNAIYFKGNWEKQFNKEHTREMPFKVSKNEEKPVQMMFKK 205          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: ILEU_BOVIN (Leukocyte elastase inhibitor OS=Bos taurus GN=SERPINB1 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 62/198 (31.31%), Postives = 94/198 (47.47%), Query Frame = 2
Query:   92 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGP-RLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKK 682
            D+ L+LT+H         N+  SP SI   L+++  G++G T  Q+   L  +  +  + F S     + AD +  G P  L +AN ++ +KS      F      +Y A    VDF     +  +  N W +++T G + E+L  G VD+ T+L+  NA+YFKG W E F    TKD  F L    +  V  M  KK
Sbjct:   14 DLFLTLTEHNPA-----GNIFISPFSISSALAMVFLGARGDTAAQMSKALHFEGVEIHSGFQS-----LNADINKCGAPYTLKLANRLFGEKSYDFLPEFLASTQEMYSAELASVDFLRAPEDARKTINAWVKEQTGGKIPELLASGMVDSLTKLVLVNAIYFKGKWQEKFMVEATKDAPFRLNKKETKTVKMMYQKK 201          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: ALSI_TAMSI (Alpha-1-antitrypsin-like protein CM55-SI OS=Tamias sibiricus PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 60/198 (30.30%), Postives = 104/198 (52.53%), Query Frame = 2
Query:   92 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFAD-----GSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            + ALS  + +A  ++  +N+ FSP SI   L+++S G+KG T  Q+L  L    D  L   A   +   F         P+   +L+  NG++ID++L L + F + V ++Y + +   +F T   E  ++ N + EK T G + E+L    +D  T L   N ++FKG W + F+  +T++ DFH+    +++VP M
Sbjct:   51 EFALSFYRVLA-RQSNTTNIFFSPVSIATALAMLSLGTKGDTHTQILEGL----DFNLTEMAEADIHQGFQHLLQTLNRPNTQLQLTSGNGLFIDRNLKLLDKFLEDVKSLYHSEAFSTNF-TNTEEARQQINSYVEKGTKGKIVELLK--ELDRDTVLALVNYIFFKGKWKQPFNEEQTREKDFHVDEATTVRVPMM 240          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: A1AT_MUSSA (Alpha-1-antiproteinase OS=Mus saxicola GN=Serpina1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 62/210 (29.52%), Postives = 102/210 (48.57%), Query Frame = 2
Query:   53 QSMDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            QS    E  +N  D A SL + + + ++  SN+ FSP SI    +L+S GSKG T  Q+L  L+      S+  ++     L+  +     P    +LS  NG++++  L L   F +   N Y++    V+F  K+ E  +  N + EK T G + + +    +D  T    AN ++F+G W   FD   T + DFH+    +++VP M
Sbjct:   37 QSPASHEMATNLGDFAFSLYREL-VHQSNTSNIFFSPVSIATAFALLSLGSKGDTQTQILEGLQFNLTQTSEADIHKVFQHLLQTL---NRPDSELQLSTGNGLFVNNDLKLVEKFLEEAKNHYQSEVFSVNF-AKSEEARKMINDFVEKGTQGKIVDAVK--DLDEDTVFALANYIFFQGKWKTPFDPEHTTEADFHVNESTTVRVPMM 239          
The following BLAST results are available for this feature:
BLAST of FC921282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
ILEU_XENTR4.252e-1832.93Leukocyte elastase inhibitor OS=Xenopus tropicalis... [more]
ALST_TAMSI4.252e-1830.30Alpha-1-antitrypsin-like protein CM55-ST OS=Tamias... [more]
SPB8_HUMAN5.553e-1832.18Serpin B8 OS=Homo sapiens GN=SERPINB8 PE=1 SV=2[more]
SPB13_MOUSE5.553e-1828.72Serpin B13 OS=Mus musculus GN=Serpinb13 PE=2 SV=1[more]
PAI1_MOUSE5.553e-1828.38Plasminogen activator inhibitor 1 OS=Mus musculus ... [more]
NEUS_CHICK5.553e-1826.58Neuroserpin OS=Gallus gallus GN=SERPINI1 PE=1 SV=1[more]
SPB6_MOUSE7.253e-1830.65Serpin B6 OS=Mus musculus GN=Serpinb6 PE=2 SV=1[more]
ILEU_BOVIN7.253e-1831.31Leukocyte elastase inhibitor OS=Bos taurus GN=SERP... [more]
ALSI_TAMSI7.253e-1830.30Alpha-1-antitrypsin-like protein CM55-SI OS=Tamias... [more]
A1AT_MUSSA7.253e-1829.52Alpha-1-antiproteinase OS=Mus saxicola GN=Serpina1... [more]

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Properties
Property NameValue
Genbank descriptionC32103B12EF RVDevelopN Citrus clementina cDNA clone C32103B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921282 ID=FC921282; Name=FC921282; organism=Citrus clementina; type=EST; length=706bp
GATCTAAAACTTGTCAGTCCGTTTCTTCATCGTTTCCAGAGAGAGTAGTT
TGCAGAGCATGGACGTACGCGAATCAATCAGCAACCAAACCGACGTCGCT
TTGTCTCTAACAAAGCACGTTGCCCTAACCGAAGCTAAAGACTCGAACCT
CGTCTTCTCGCCGTCATCGATCCACGTTCTGCTGAGCCTGATCTCGGCTG
GATCCAAGGGCCCCACTCTCGACCAGTTGCTCTCTTTTCTCAAGTCCAAA
TCCGACGACCAACTTAACACCTTCGCCTCCGAACTCGTCGCCGTCGTTTT
TGCCGACGGAAGTCCTAGCGGCGGGCCCCGCTTGTCCGTGGCCAATGGTG
TTTGGATTGATAAGTCACTTTCTCTCAAGAATACTTTCAAACAGGTTGTG
GACAACGTCTACAAGGCTGCTTCTAATCAAGTCGATTTCCAAACCAAGGC
TGCTGAAGTATCCAGAGAAGCGAACATGTGGGCTGAGAAGGAGACCAATG
GCCTTGTTAAAGAGGTTCTTCCTCCTGGTTCAGTTGACAATTCAACCAGG
CTCATCTTTGCAAATGCACTATACTTCAAAGGAGCTTGGAATGAAACATT
TGATTCATCAAAGACAAAAGACTATGACTTTCACCTTCTCAATGGAGGCT
CCATTAAAGTGCCGTTCATGACTAGCAAGAAGAATCAGTTTGTGAGTGCC
TTTGAT
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