FC921282

Overview
NameFC921282
Unique NameFC921282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPB13_HUMAN (Serpin B13 OS=Homo sapiens GN=SERPINB13 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 52/197 (26.40%), Postives = 90/197 (45.69%), Query Frame = 2
Query:  125 LTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSP--------------SGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMT 673
            L +  D N+ FSP  I   + ++  G++G T  QL     S+ + + +   +E   V+    +               +    L++ N ++ +K+      +   V+  Y A+   VDF   A E  ++ N W E +TN  +K++ P GS+ +ST+L+  N +YFKG W+  F    TK+  F +    S  V  MT
Sbjct:   19 LKKTNDGNIFFSPVGILTAIGMVLLGTRGATASQLEEVFHSEKETKSSRIKAEEKEVIENTEAVHQQFQKFLTEISKLTNDYELNITNRLFGEKTYLFLQKYLDYVEKYYHASLEPVDFVNAADESRKKINSWVESKTNEKIKDLFPDGSISSSTKLVLVNMVYFKGQWDREFKKENTKEEKFWMNKSTSKSVQMMT 215          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPB10_HUMAN (Serpin B10 OS=Homo sapiens GN=SERPINB10 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 60/214 (28.04%), Postives = 100/214 (46.73%), Query Frame = 2
Query:   98 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDD--------------QLNTFASELV-----AVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKK 682
            AL L+K +A   A+  N+ FS  SI   L+++  G+KG T  Q+   L+   D               + N   SE +      ++     P+    L  AN ++ +K+ +  N + + +   + A    V+F   + ++ ++ N W E++T G ++ +LP  SVD++TR+I  NALYFKG W   F    T +  F +    S  V  M  KK
Sbjct:   12 ALELSKKLA-ESAQGKNIFFSSWSISTSLTIVYLGAKGTTAAQMAQVLQFNRDQGVKCDPESEKKRKMEFNLSNSEEIHSDFQTLISEILKPNDDYLLKTANAIYGEKTYAFHNKYLEDMKTYFGAEPQPVNFVEASDQIRKDINSWVERQTEGKIQNLLPDDSVDSTTRMILVNALYFKGIWEHQFLVQNTTEKPFRINETTSKPVQMMFMKK 224          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: ILEUA_MOUSE (Leukocyte elastase inhibitor A OS=Mus musculus GN=Serpinb1a PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 56/179 (31.28%), Postives = 87/179 (48.60%), Query Frame = 2
Query:  146 NLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKK 682
            N+ FSP SI   L+++  G+KG T  QL       S + +++    L A V   G+      L +AN ++ +K+ +    +      +Y A    VDF   + +  +E N W + +T G + E+L  G VD+ T+L+  NA+YFKG W E F +  T D  F L    +  V  M  KK
Sbjct:   27 NIFFSPFSISSALAMVILGAKGSTAAQLSKTFHFDSVEDIHSRFQSLNAEVSKRGASH---TLKLANRLYGEKTYNFLPEYLASTQKMYGADLAPVDFLHASEDARKEINQWVKGQTEGKIPELLSVGVVDSMTKLVLVNAIYFKGMWEEKFMTEDTTDAPFRLSKKDTKTVKMMYQKK 202          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPA31_BOVIN (Serpin A3-1 OS=Bos taurus GN=SERPINA3-1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 57/199 (28.64%), Postives = 103/199 (51.76%), Query Frame = 2
Query:   80 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMT 673
            S+ TD A SL K +AL    + N++ SP S+ + L+ +S G++G TL ++L  LK + ++ Q          ++ A   PS   +LSV N +++ + L L + F +    +Y + +   +F+   A  S   N + + +T G ++E+     +   T L+  N +YFK  W   FD   T+  +FH+ +  +++VP MT
Sbjct:   45 SSNTDFAFSLYKQLALKNP-NKNVILSPLSVSIALAFLSLGARGSTLTEILEGLKFNLTEIQEKEIHHSFQHLLQALNQPSNQLQLSVGNAMFVQEELKLLDKFIEDAQVLYSSEAFPTNFRDSEAARSL-INDYVKNKTQGKIEELFK--YLSPRTELVLVNYIYFKAQWKTPFDPKHTEQAEFHVSDNKTVEVPMMT 239          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: PAI1_HUMAN (Plasminogen activator inhibitor 1 OS=Homo sapiens GN=SERPINE1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 58/194 (29.90%), Postives = 94/194 (48.45%), Query Frame = 2
Query:  134 AKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-----LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREA---NMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQF 691
            +KD N+VFSP  +  +L+++   + G T  Q+ + +  K DD+     L     EL+        P     +S  + +++ + L L   F      ++++   QVDF    +EV R     N W +  T G++  +L  G+VD  TRL+  NALYF G W   F  S T    FH  +G ++ VP M ++ N+F
Sbjct:   50 SKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGMAPALRHLYKELMG-------PWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF----SEVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMM-AQTNKF 231          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: ALMS_SPETR (Alpha-1-antitrypsin-like protein GS55-MS OS=Spermophilus tridecemlineatus PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 59/200 (29.50%), Postives = 106/200 (53.00%), Query Frame = 2
Query:   83 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFL----KSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            N  + ALSL + +A  E+  +N+ FSP SI + L+ +S G+K  T  Q++  L       ++  ++     L+  +     P+   +L+  NG++ID +L L + F Q V N+Y + +   DF T   E  ++ N + EK T G + +++   + D+   L+  N ++FKG W + F+   TK+ DFH+    +++VP M
Sbjct:   48 NLAEFALSLYRVLA-HESNTTNIFFSPVSIAMALASLSLGTKADTHTQIMEGLGFNLTETAESDIHQGFQHLLQTL---NKPNSQLQLTTGNGLFIDHNLKLLDKFLQDVKNLYHSEAFSTDF-TNTEEAKKQINTYVEKGTQGKIVDLVKDLNRDSVLALV--NYIFFKGKWEKPFEVDHTKEEDFHVDQVTTVRVPMM 240          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: A1AT_CALCN (Alpha-1-antiproteinase OS=Callosciurus caniceps PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 56/197 (28.43%), Postives = 102/197 (51.78%), Query Frame = 2
Query:   83 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASE-LVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            N  + A  L + +A  ++  +N+ FSP S+   L+ +S G+KG T  Q+L  L     +   T   +    ++     P+   +L+  NG++ID+SL L + F + V N+Y + +   +F T + E  ++ N + EK T G + + +   ++D +T     N ++FKG W + F+   T + DFH+    ++KVP M
Sbjct:   48 NLAEFAFDLYRVLA-RQSNTTNIFFSPVSVATALAALSLGTKGDTHTQILEGLDFNLTEMAETDIHQGFQHLLQTLNRPNNQLQLTTGNGLFIDQSLKLADKFLEDVKNLYHSEAFSTNF-TDSEEAKKQINGYVEKGTQGKIVDAVK--TLDKNTVFALVNYIFFKGKWEKPFEVEHTTEGDFHVDQATTVKVPMM 240          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: A1AS_CAVPO (Alpha-1-antiproteinase S OS=Cavia porcellus PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 58/189 (30.69%), Postives = 94/189 (49.74%), Query Frame = 2
Query:  119 VALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSK-----SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            V   ++  SN+ FSP SI   L+++S G+KG T  Q+L  L+         D  N F + L  +      P    +L+  NG+++D+ L LK  F + V  +Y A +   +F +   E  ++ N + EK T G + +++   S D  T L   N ++F+G W + FD   T   DFH+    ++KVP M
Sbjct:   51 VLTQQSNTSNIFFSPVSIATALAMVSVGAKGDTHTQILRGLEFNLTEIAEADIHNGFQNLLHTL----NRPHSEHQLTTGNGLFLDQKLKLKEKFSEDVKTLYHAEAFPTNF-SNPKEAEKQINAYVEKGTQGKIVDLVKDLSAD--TVLALVNYIFFRGKWEKPFDVKHTTQEDFHVDTSTTVKVPMM 232          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: SPA3G_MOUSE (Serine protease inhibitor A3G OS=Mus musculus GN=Serpina3g PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 61/214 (28.50%), Postives = 108/214 (50.47%), Query Frame = 2
Query:   41 ESSLQSMDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 670
            + ++ S+D    +S+ TD A SL + + L    D N+VFSP SI   L+L+S G+K  TL ++L  LK       +  ++     L+ ++     P    ++S  + ++I+K L +   FK+    +Y+A +   DFQ +  + ++  N +    T G +KE++    +  ST ++  N +YFKG W   FD + T   +F+L    S+ V  M
Sbjct:   26 QENVTSVDSLTLVSSNTDFAFSLYRKLVLKNP-DENVVFSPFSICTALALLSLGAKSNTLKEILEGLKFNLTETPEPDIHQGFRYLLDLL---SQPGNQVQISTGSALFIEKHLQILAEFKEKARALYQAEAFTADFQ-QPLKATKLINDYVSNHTQGKIKELI--SGLKESTLMVLVNYIYFKGKWKNPFDPNDTFKSEFYLDEKRSVIVSMM 232          
BLAST of FC921282 vs. ExPASy Swiss-Prot
Match: ILEUC_MOUSE (Leukocyte elastase inhibitor C OS=Mus musculus GN=Serpinb1c PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 54/180 (30.00%), Postives = 87/180 (48.33%), Query Frame = 2
Query:  146 NLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREANMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKN 685
            N +FSP SI   L+++  G++G T  QL   L   S + +++    L A V   G+      L +AN ++ +K+ +    +   +   Y A    VDFQ  + +  +E N W + +T   ++E+   G VD+ T+L+  NA YFKG W + F +  T D  F L    +  V  M  K N
Sbjct:   27 NTIFSPVSISSALAMVYLGARGSTAAQLSKTLHFDSAEDIHSQFQSLTAEVSKRGASH---TLKLANRLYGEKTYNFLPEYLASIQKTYSADLALVDFQHASEDARKEINQWVKGQTEEKIQELFAVGVVDSMTKLVLVNATYFKGMWQKKFMARDTTDAPFRLSKKVTKTVKMMYLKNN 203          
The following BLAST results are available for this feature:
BLAST of FC921282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
SPB13_HUMAN9.472e-1826.40Serpin B13 OS=Homo sapiens GN=SERPINB13 PE=2 SV=2[more]
SPB10_HUMAN9.472e-1828.04Serpin B10 OS=Homo sapiens GN=SERPINB10 PE=1 SV=1[more]
ILEUA_MOUSE9.472e-1831.28Leukocyte elastase inhibitor A OS=Mus musculus GN=... [more]
SPA31_BOVIN1.616e-1728.64Serpin A3-1 OS=Bos taurus GN=SERPINA3-1 PE=1 SV=3[more]
PAI1_HUMAN1.616e-1729.90Plasminogen activator inhibitor 1 OS=Homo sapiens ... [more]
ALMS_SPETR1.616e-1729.50Alpha-1-antitrypsin-like protein GS55-MS OS=Spermo... [more]
A1AT_CALCN2.110e-1728.43Alpha-1-antiproteinase OS=Callosciurus caniceps PE... [more]
A1AS_CAVPO2.110e-1730.69Alpha-1-antiproteinase S OS=Cavia porcellus PE=1 S... [more]
SPA3G_MOUSE3.599e-1728.50Serine protease inhibitor A3G OS=Mus musculus GN=S... [more]
ILEUC_MOUSE3.599e-1730.00Leukocyte elastase inhibitor C OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32103B12EF RVDevelopN Citrus clementina cDNA clone C32103B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921282 ID=FC921282; Name=FC921282; organism=Citrus clementina; type=EST; length=706bp
GATCTAAAACTTGTCAGTCCGTTTCTTCATCGTTTCCAGAGAGAGTAGTT
TGCAGAGCATGGACGTACGCGAATCAATCAGCAACCAAACCGACGTCGCT
TTGTCTCTAACAAAGCACGTTGCCCTAACCGAAGCTAAAGACTCGAACCT
CGTCTTCTCGCCGTCATCGATCCACGTTCTGCTGAGCCTGATCTCGGCTG
GATCCAAGGGCCCCACTCTCGACCAGTTGCTCTCTTTTCTCAAGTCCAAA
TCCGACGACCAACTTAACACCTTCGCCTCCGAACTCGTCGCCGTCGTTTT
TGCCGACGGAAGTCCTAGCGGCGGGCCCCGCTTGTCCGTGGCCAATGGTG
TTTGGATTGATAAGTCACTTTCTCTCAAGAATACTTTCAAACAGGTTGTG
GACAACGTCTACAAGGCTGCTTCTAATCAAGTCGATTTCCAAACCAAGGC
TGCTGAAGTATCCAGAGAAGCGAACATGTGGGCTGAGAAGGAGACCAATG
GCCTTGTTAAAGAGGTTCTTCCTCCTGGTTCAGTTGACAATTCAACCAGG
CTCATCTTTGCAAATGCACTATACTTCAAAGGAGCTTGGAATGAAACATT
TGATTCATCAAAGACAAAAGACTATGACTTTCACCTTCTCAATGGAGGCT
CCATTAAAGTGCCGTTCATGACTAGCAAGAAGAATCAGTTTGTGAGTGCC
TTTGAT
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