FC921294

Overview
NameFC921294
Unique NameFC921294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: 3HIDH_ARATH (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 61/197 (30.96%), Postives = 94/197 (47.72%), Query Frame = 2
Query:  155 VGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSG---LRPGGIIVDMTTXXXXXXXXXXXXXXXKNCS------------AIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVN-YMGGSGKGQFAKLAKSITIATTMVG 697
            VG+IG G MG  M  +L+ AGY VTV +      +   ++G    ++P+ +A  S+VV +++   S V  V    ++G L G   +RP  + +D +T                NC+             +DAPVSGG   A+ GTL    GG E       P+   MG+ + Y GGSG G  AK+  ++ +A +M+G
Sbjct:   40 VGFIGLGNMGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYT-GTNGLLLGENDIRP-ALFIDSST--IDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLG 232          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: MMSB_MYCTU (Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium tuberculosis GN=mmsB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 53/183 (28.96%), Postives = 87/183 (47.54%), Query Frame = 2
Query:  149 TRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALM-GKVNYMGGSGKGQFAKLAKSITIATTMV 694
            T + ++G G MG  M A+L+ AG+ V  F+   + A      G  +  S     +++DVV +++     VR       +  L+  RP  + +D +T                    +DAPVSGG +GA   TLA   GGDES +++  P+   M GK+ + G +G GQ AK+  ++ +A   +
Sbjct:    2 TTIAFLGLGNMGAPMSANLVGAGHVVRGFDPAPTAASGAAAHGVAVFRSAPEAVAEADVVITMLPTGEVVRRCY----TDVLAAARPATLFIDSSTISVTDAREVHALAESHGMLQLDAPVSGGVKGAAAATLAFMVGGDESTLRRARPVLEPMAGKIIHCGAAGAGQAAKVCNNMVLAVQQI 180          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: MMSB_MYCBO (Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium bovis GN=mmsB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 53/183 (28.96%), Postives = 87/183 (47.54%), Query Frame = 2
Query:  149 TRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALM-GKVNYMGGSGKGQFAKLAKSITIATTMV 694
            T + ++G G MG  M A+L+ AG+ V  F+   + A      G  +  S     +++DVV +++     VR       +  L+  RP  + +D +T                    +DAPVSGG +GA   TLA   GGDES +++  P+   M GK+ + G +G GQ AK+  ++ +A   +
Sbjct:    2 TTIAFLGLGNMGAPMSANLVGAGHVVRGFDPAPTAASGAAAHGVAVFRSAPEAVAEADVVITMLPTGEVVRRCY----TDVLAAARPATLFIDSSTISVTDAREVHALAESHGMLQLDAPVSGGVKGAAAATLAFMVGGDESTLRRARPVLEPMAGKIIHCGAAGAGQAAKVCNNMVLAVQQI 180          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: GLYR1_AEDAE (Putative oxidoreductase GLYR1 homolog OS=Aedes aegypti GN=AAEL006684 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 54/186 (29.03%), Postives = 87/186 (46.77%), Query Frame = 2
Query:  143 TNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVN-YMGGSGKGQFAKLAKSITIATTMVG 697
            +N + G++G GIMG  M  +LLN+G++V V+NRT +K +   + GA +AD+P  +   +DV FS V  P  V   L+  + G +S    G   V+MT                K    ++A + G    A+ GTL I A G+  + ++    F  + + + YMG  G      L   +     + G
Sbjct:  272 SNLKFGFLGLGIMGCGMVKNLLNSGHSVVVWNRTATKCRKFQEAGAEVADTPSDVIEMTDVTFSCVADP-QVAKELVFGNCGVMSANLVGKGYVEMTGVDPETSHDIAEQIIAKGGRYLEAQIQGSKNQAEEGTLIILAAGERLLFEECQTCFEAISRNSFYMGDVGNATKMNLVLQMISGVMLAG 456          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: MMSB_PSEAE (3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa GN=mmsB PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 55/184 (29.89%), Postives = 87/184 (47.28%), Query Frame = 2
Query:  149 TRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLAKSITIATTMVG 697
            T + ++G G MG  M A+LL AG+ V VF+        L++ GA  ADS       ++VV S++     V  + L    G L+ +    +++D +T               K  + +DAPVSGG  GA+ GTL+   GG      +  P+   MG+ + + G  G GQ AK+  ++ +   M G
Sbjct:    2 TDIAFLGLGNMGGPMAANLLKAGHRVNVFDLQPKAVLGLVEQGAQGADSALQCCEGAEVVISMLPAGQHVESLYLG-DDGLLARVAGKPLLIDCSTIAPETARKVAEAAAAKGLTLLDAPVSGGVGGARAGTLSFIVGGPAEGFARARPVLENMGRNIFHAGDHGAGQVAKICNNMLLGILMAG 184          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: 3HIDH_DROME (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 53/184 (28.80%), Postives = 87/184 (47.28%), Query Frame = 2
Query:  155 VGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALS--GLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGGSGKGQFAKLAKSITIATTMVG 697
            +G++G G MG +M ++L+ AG+ + VF+ +      L   GA +      LA  SD V +++       + ++  S   ++  G+    I +D +T               K    IDAPVSGG  GA+  TL    GG E+    +  +   MG K+ + G  G GQ AKL  ++ +A +M+G
Sbjct:   31 IGFVGLGNMGANMASNLIKAGHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDFVITMLP-----NNAIVDASYDEMTADGVNKDTIFIDSSTISPDLVKSLQKKISAKGARFIDAPVSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNNMMLAISMIG 209          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: YIHU_SHIFL (Uncharacterized oxidoreductase yihU OS=Shigella flexneri GN=yihU PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = 2
Query:  155 VGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGGSGKGQFAKL 661
            + +IG G MG  M ++LL  G+ + VF+      + L+D GA  A +P   A  ++ + +++     VR+VL    +G   GL    +++DM+T               K  S +D PV      A TGTL + AGG    V++  P+   MG ++   GG G G   KL
Sbjct:    4 IAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFIITMLPNGDLVRNVLFG-ENGVCEGLSTDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSANAITGTLLLLAGGTAEQVERATPILMAMGSELINAGGPGMGIRVKL 172          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: YIHU_ECOLI (Uncharacterized oxidoreductase yihU OS=Escherichia coli (strain K12) GN=yihU PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = 2
Query:  155 VGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGGSGKGQFAKL 661
            + +IG G MG  M ++LL  G+ + VF+      + L+D GA  A +P   A  ++ + +++     VR+VL    +G   GL    +++DM+T               K  S +D PV      A TGTL + AGG    V++  P+   MG ++   GG G G   KL
Sbjct:    4 IAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFIITMLPNGDLVRNVLFG-ENGVCEGLSTDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSANAITGTLLLLAGGTAEQVERATPILMAMGSELINAGGPGMGIRVKL 172          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: GLYR1_DROPS (Putative oxidoreductase GLYR1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA18401 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 52/189 (27.51%), Postives = 88/189 (46.56%), Query Frame = 2
Query:  140 PTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGA--LSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLAKSITIATTMVG 697
            P+    G++G G+MG ++   L+  G+ V V+NRT+ K QP ++ GA + D+P  +   +D++F  V  P   +  L+  + G   L  LR     V+M+T                N   ++A + G  + A  G L I AGGD +V ++ +  F  + K   ++G  G      L      A ++VG
Sbjct:  323 PSELTFGFLGLGMMGSTIVKDLIYTGHKVVVWNRTIDKCQPFVEAGAEVKDTPMDVVEAADIIFCCVSDPKGAKD-LVFGNCGVLQLKDLR-NKAYVEMSTVDPDTSLDIGEGIKQCNGRYLEAQIHGSRQEAADGMLIILAGGDRTVFEECHSCFKTIAKNTFFLGNVGNACKVNLILQTIQAVSLVG 509          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: GLYR1_DROME (Putative oxidoreductase GLYR1 homolog OS=Drosophila melanogaster GN=CG4747 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 52/189 (27.51%), Postives = 87/189 (46.03%), Query Frame = 2
Query:  140 PTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRP--GGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLAKSITIATTMVG 697
            P+    G++G G+MG ++   L+  G+ V V+NRT+ K QP  + GA + D+P  +   +DV+F  V  P   +  L+  + G L  L+       V+M+T                N   ++A + G  + A  G L I AGGD SV ++ +  F  + K   ++G  G      L     +  ++VG
Sbjct:  313 PSEQTFGFLGLGMMGSTIVKDLIYTGHKVVVWNRTIDKCQPFAEAGAEVKDTPMDVVEAADVIFCCVSDPKGAKD-LVFGNCGVLQ-LKDLNNKAYVEMSTIDPDTSLDIGEGIKQCNGRYLEAQIHGSRQEAAEGMLIILAGGDRSVFEECHSCFKTIAKNTFFLGNIGNACKVNLILQTILGVSLVG 499          
The following BLAST results are available for this feature:
BLAST of FC921294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
3HIDH_ARATH6.621e-1630.96Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
MMSB_MYCTU1.129e-1528.96Probable 3-hydroxyisobutyrate dehydrogenase OS=Myc... [more]
MMSB_MYCBO1.129e-1528.96Probable 3-hydroxyisobutyrate dehydrogenase OS=Myc... [more]
GLYR1_AEDAE1.129e-1529.03Putative oxidoreductase GLYR1 homolog OS=Aedes aeg... [more]
MMSB_PSEAE1.927e-1529.893-hydroxyisobutyrate dehydrogenase OS=Pseudomonas ... [more]
3HIDH_DROME8.094e-1428.80Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
YIHU_SHIFL1.381e-1330.00Uncharacterized oxidoreductase yihU OS=Shigella fl... [more]
YIHU_ECOLI1.381e-1330.00Uncharacterized oxidoreductase yihU OS=Escherichia... [more]
GLYR1_DROPS1.381e-1327.51Putative oxidoreductase GLYR1 homolog OS=Drosophil... [more]
GLYR1_DROME1.381e-1327.51Putative oxidoreductase GLYR1 homolog OS=Drosophil... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32103C12EF RVDevelopN Citrus clementina cDNA clone C32103C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921294 ID=FC921294; Name=FC921294; organism=Citrus clementina; type=EST; length=698bp
GATGCCACCGCTACTGCCACTCCTATTGGTCCTGCGCTCCCGCACGGCTC
ACTCTTACTCCCGCTCAGTTTCTTCACTCGTGACTCTCCTCCGCCGCCGC
CGCTCAATGGCTACTGTCGCATCCACCGATCCCGCCAGCCCCACCAACAC
CCGCGTCGGCTGGATCGGCACAGGCATCATGGGTCGATCCATGTGCGCCC
ACTTACTCAATGCCGGCTACACCGTCACCGTCTTCAACCGCACCCTCTCC
AAGGCCCAGCCTCTCCTCGACATCGGTGCCCACCTCGCCGACTCCCCCCA
TTCGCTCGCTTCCCAATCCGACGTCGTTTTCTCCATAGTCGGCTACCCTT
CCGACGTCCGCCACGTCCTCCTCCACCCCTCTTCCGGCGCCCTCTCTGGC
CTTCGTCCCGGTGGAATCATCGTCGACATGACCACCTCCGAACCCTCCCT
CGCCTCCGAGTTATCCGCCGCCGCCTCCTCCAAAAACTGCTCCGCCATCG
ACGCCCCTGTGTCCGGCGGTGACCGCGGCGCCAAAACCGGAACCCTCGCT
ATATTCGCCGGAGGGGACGAATCCGTAGTTCAAAAGTTAAATCCCCTTTT
TGCCCTCATGGGGAAAGTTAATTACATGGGTGGCAGTGGGAAAGGACAAT
TCGCGAAGCTGGCGAAATCAATCACGATCGCTACTACGATGGTTGGAT
back to top