FC921294

Overview
NameFC921294
Unique NameFC921294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: GLYR1_ANOGA (Putative oxidoreductase GLYR1 homolog OS=Anopheles gambiae GN=AGAP009949 PE=3 SV=5)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 47/183 (25.68%), Postives = 85/183 (46.45%), Query Frame = 2
Query:  152 RVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVN-YMGGSGKGQFAKLAKSITIATTMVG 697
            + G++G G+MG  +  +L+ +G++V V+NR+  K +   ++GA +AD+P  +   +DV +S V  P  V   ++  + G +S    G   V+MT                K    ++A + G    A+ GTL I A GD  + ++    F  + + + Y+G  G      L   +    T+ G
Sbjct:  282 KFGFLGLGVMGCGIVKNLIKSGHSVVVWNRSAHKCRKFQEVGAEVADTPSDVVEMTDVTYSCVSDP-QVAKDMVFGNCGVMSANLAGKGYVEMTGVDPETSNDINEAIISKGGRYLEAQIQGSKNQAEEGTLIILASGDRLLFEECQSCFEAISRNSFYLGDVGNATKMNLILQMISGITLAG 463          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: YIHU_SALTY (Uncharacterized oxidoreductase yihU OS=Salmonella typhimurium GN=yihU PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 51/170 (30.00%), Postives = 77/170 (45.29%), Query Frame = 2
Query:  155 VGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMG-KVNYMGGSGKGQFAKL 661
            + +IG G MG  M ++LL  G+ ++VF+      Q L+D GA  A SP      ++ V +++     VR VL     G    L    +++DM+T               K  S +D P+      A TGTL + AGG    V++  P+   MG ++   GG G G   KL
Sbjct:    4 IAFIGLGQMGSPMASNLLKQGHQLSVFDVNPDAVQRLVDKGAQPASSPAQATIGAEFVITMLPNGDLVRSVLFG-EQGVCETLSREALVIDMSTIHPLQTDNLIADMQSKGFSMMDVPIGRTSDNAITGTLLLLAGGTAEQVERATPVLMAMGNELVNTGGPGMGIRVKL 172          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: YFJR_BACSU (Uncharacterized oxidoreductase yfjR OS=Bacillus subtilis GN=yfjR PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 46/149 (30.87%), Postives = 65/149 (43.62%), Query Frame = 2
Query:  152 RVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPL 598
            ++  IG G MG+ +  ++L AGY +TV+NRT  K + L+  GA  AD+P   A  +D+V +++     V  V      G L GL   GI + M+T               K    + APV G    A    L I   G     Q   PL
Sbjct:    2 KIAVIGLGNMGQPIARNVLQAGYELTVYNRTKQKTEDLVTEGAQAADTPRLAAKSADIVITMLADDDSVSTVTF-GEDGLLEGLAENGIHISMSTISVEFSEKLAAAHAEKGQFFLAAPVLGRPDAAAKAALRIITAGPAEAKQAAKPL 149          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: 3HIDH_CAEEL (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 47/181 (25.97%), Postives = 83/181 (45.86%), Query Frame = 2
Query:  158 GWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAG-GDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLAKSITIATTMV 694
            G+IG G MG  M  +L+  G  + V++   +  Q     G  +A  P  +A+ S  + +++     V+ V     +G    ++PG + +D +T                    IDAP+SGG  GA+  TL    G G+++  ++   + +LMGK +  +G  G G  AK+  ++ +   MV
Sbjct:    5 GFIGLGNMGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITVLPSSPHVKAVY-QGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMV 184          
The following BLAST results are available for this feature:
BLAST of FC921294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
GLYR1_ANOGA2.355e-1325.68Putative oxidoreductase GLYR1 homolog OS=Anopheles... [more]
YIHU_SALTY3.401e-1230.00Uncharacterized oxidoreductase yihU OS=Salmonella ... [more]
YFJR_BACSU7.576e-1230.87Uncharacterized oxidoreductase yfjR OS=Bacillus su... [more]
3HIDH_CAEEL2.879e-1125.97Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionC32103C12EF RVDevelopN Citrus clementina cDNA clone C32103C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921294 ID=FC921294; Name=FC921294; organism=Citrus clementina; type=EST; length=698bp
GATGCCACCGCTACTGCCACTCCTATTGGTCCTGCGCTCCCGCACGGCTC
ACTCTTACTCCCGCTCAGTTTCTTCACTCGTGACTCTCCTCCGCCGCCGC
CGCTCAATGGCTACTGTCGCATCCACCGATCCCGCCAGCCCCACCAACAC
CCGCGTCGGCTGGATCGGCACAGGCATCATGGGTCGATCCATGTGCGCCC
ACTTACTCAATGCCGGCTACACCGTCACCGTCTTCAACCGCACCCTCTCC
AAGGCCCAGCCTCTCCTCGACATCGGTGCCCACCTCGCCGACTCCCCCCA
TTCGCTCGCTTCCCAATCCGACGTCGTTTTCTCCATAGTCGGCTACCCTT
CCGACGTCCGCCACGTCCTCCTCCACCCCTCTTCCGGCGCCCTCTCTGGC
CTTCGTCCCGGTGGAATCATCGTCGACATGACCACCTCCGAACCCTCCCT
CGCCTCCGAGTTATCCGCCGCCGCCTCCTCCAAAAACTGCTCCGCCATCG
ACGCCCCTGTGTCCGGCGGTGACCGCGGCGCCAAAACCGGAACCCTCGCT
ATATTCGCCGGAGGGGACGAATCCGTAGTTCAAAAGTTAAATCCCCTTTT
TGCCCTCATGGGGAAAGTTAATTACATGGGTGGCAGTGGGAAAGGACAAT
TCGCGAAGCTGGCGAAATCAATCACGATCGCTACTACGATGGTTGGAT
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