FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SHIB3 (Peptide methionine sulfoxide reductase msrA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=msrA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.488e-26
Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E++F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVESLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ESCF3 (Peptide methionine sulfoxide reductase msrA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.239e-25
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQ----MKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +      HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S+ER Q      +    VTT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGETGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDSAARASRERFQAAMIAANDDRPVTTEIANATPFYYAEDDHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECOSE (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain SE11) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.239e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDQGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SHISS (Peptide methionine sulfoxide reductase msrA OS=Shigella sonnei (strain Ss046) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SHIFL (Peptide methionine sulfoxide reductase msrA OS=Shigella flexneri GN=msrA PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SHIF8 (Peptide methionine sulfoxide reductase msrA OS=Shigella flexneri serotype 5b (strain 8401) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SHIBS (Peptide methionine sulfoxide reductase msrA OS=Shigella boydii serotype 4 (strain Sb227) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALTY (Peptide methionine sulfoxide reductase msrA OS=Salmonella typhimurium GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 65/155 (41.94%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI++ QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVISYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMTAAGDHRPITTEIAHATPFYYAEDEHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALNS (Peptide methionine sulfoxide reductase msrA OS=Salmonella newport (strain SL254) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 65/155 (41.94%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI++ QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVISYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMTAAGDHRPITTEIAHATPFYYAEDEHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECOSM (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQY-LHKNPY 196          
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_SHIB39.488e-2642.58Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_ESCF31.239e-2541.94Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOSE1.239e-2542.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_SHISS1.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIFL1.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIF81.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIBS1.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SALTY1.618e-2541.94Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALNS1.618e-2541.94Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_ECOSM1.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
back to top