FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_GEOSL (Peptide methionine sulfoxide reductase msrA OS=Geobacter sulfurreducens GN=msrA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22
Identity = 58/149 (38.93%), Postives = 79/149 (53.02%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK-SSIVTTQIQQLVAFYPAEPEHQKFELKR 590
            L+ A F  G FW  E  F  + GVV T  GY GG K +P +  +      HAE V+V +DP  + +  LL VFW  HD  Q+  QGPD+G  YRS+IF +  ++ R A  S E EQ   + +  + T+I     F+ AE  HQ +  KR
Sbjct:    7 LEKATFGAGCFWHVEEEFRRVPGVVSTLAGYMGGWKEHPTYEEVCSKTTGHAEVVEVTFDPAAVTYDHLLRVFWDCHDPTQLNRQGPDIGTNYRSVIFYHSPDQERAARASLEHEQRSGRHARPIVTEIVPAATFWWAEEYHQHYLEKR 155          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_CYAP8 (Peptide methionine sulfoxide reductase msrA OS=Cyanothece sp. (strain PCC 8801) GN=msrA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22
Identity = 62/153 (40.52%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQM---KSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            L+ A+F LG FW +E  F    GV  T VGYA G   NP ++     L  H E V V +DP++I++ +LL+VFW SH+  Q   QG DVG QYRS I+    +  + A  SKE  Q    ++    +TT+I     FY AE  HQ++ L +NP
Sbjct:   47 LETAMFGLGCFWGAERKFWQCEGVYTTAVGYAAGITPNPTYQEVCTGLTGHNEVVLVVFDPKIISYEELLKVFWESHNPTQGMRQGNDVGTQYRSGIYVYSPQHKKAAETSKEVYQKALNQAGYGDITTEILDAPEFYYAEDYHQQY-LAKNP 198          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_BOVIN (Peptide methionine sulfoxide reductase OS=Bos taurus GN=MSRA PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22
Identity = 61/150 (40.67%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQ---MKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            AVF +G FW +E  F  L GV  T VG+AGG   NP ++ +      HAE V+V + P  I+F +LL+VFW +HD  Q   QG D G+QYRS I+    E    A  SKE  Q    +    ++TT I++   FY AE  HQ++ L ++P
Sbjct:   66 AVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGFGLITTDIREGQTFYYAEDYHQQY-LSKDP 214          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_LEPBL (Peptide methionine sulfoxide reductase msrA OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=msrA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 58/150 (38.67%), Postives = 86/150 (57.33%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++ A    G FW  EAV+  + G+     GYA G   NP++R++      HAE+VQ+ +D +VI++ ++LE+FW SHD   +  QG DVG QYRSII  +  E+ + A  S ++        IV TQ++ L  FYPAE  HQ +  + NP
Sbjct:    1 MEQATLGGGCFWCLEAVYQMVEGIESVVSGYAAGQTKNPDYRSVCSGTTGHAETVQITFDSKVISYFEILEIFWISHDPTTLNRQGNDVGIQYRSIIPYHSPEQKKQAEQSIQKAGEHFSDPIV-TQVEILKEFYPAEDYHQNY-FRTNP 148          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA2_ANASP (Peptide methionine sulfoxide reductase msrA 2 OS=Anabaena sp. (strain PCC 7120) GN=msrA2 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 63/150 (42.00%), Postives = 83/150 (55.33%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEF----RNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS---IVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            A+F LG FW +E  F    GV  T VGYA G   NP +      L  H E V V +DP+VI++ QLL+VFW SH+  Q   QG DVG QYRS I+     + +LA  S++  Q    S+    +TT+I     FY AE  HQ++ L +NP
Sbjct:   50 ALFGLGCFWGAERKFWQQQGVYSTAVGYAAGFTPNPTYDEVCTGLTGHNEVVLVVFDPKVISYTQLLKVFWESHNPTQGMRQGNDVGTQYRSGIYVYSEAQKQLAEASRDAYQQALSSAGYEKITTEILDAPEFYYAEAYHQQY-LAKNP 198          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_VIBVU (Peptide methionine sulfoxide reductase msrA OS=Vibrio vulnificus GN=msrA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 3
Query:  171 VFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQ---MKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +F +G FW +E +F  L+GVV T+VGY+GG   NP ++ +      H E V+V +DP+V+   QLLE FW  HD  Q   QG D+G QYRS I+T   ++  +A  S++  Q      + + +TT+I+    ++ AE  HQ++ L +NP
Sbjct:   46 LFGMGCFWGAERLFWQLDGVVSTSVGYSGGFTLNPTYQEVCSGQTGHTEVVRVIFDPQVLPLEQLLEKFWERHDPTQGMRQGNDLGTQYRSAIYTFSDQQLDIALASQQAYQAALANQQHNTITTEIRPAGPYFYAETYHQQY-LAKNP 193          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA1_SYNY3 (Peptide methionine sulfoxide reductase msrA 1 OS=Synechocystis sp. (strain PCC 6803) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 65/164 (39.63%), Postives = 89/164 (54.27%), Query Frame = 3
Query:  150 GRPLKA--------AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS---IVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            G PLKA        A+F LG FW +E  F  + GV  T VGYA G   NP ++     +  H E V V +DP+ +++ QLL+VFW SH+  Q   QG DVG QYRS I+T    + + A  SK+  Q   + +    +TT+I     FY AE  HQ++ L +NP
Sbjct:   37 GNPLKAPFPQGMETALFGLGCFWGAERKFWQIPGVYSTAVGYAAGYTPNPTYQEVCTGMTGHNEVVLVAFDPQQVSYDQLLKVFWESHNPTQGMRQGNDVGTQYRSGIYTYSEAQQQAALASKQAYQQALQQAGYGEITTEILPAPDFYYAEDYHQQY-LAKNP 199          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_XYLFT (Peptide methionine sulfoxide reductase msrA OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 61/146 (41.78%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  174 FALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMK----SKSSIVTTQIQQLVAFYPAEPEHQKFELK 587
            F LG FW +E +F  L GV  T  GYAGG    P +R +      HAE V V YD  VI+F QLL+ FW SHD  Q   QG D+G QYRS+I    +E+   A+ S+E  Q +      ++I T  +     FY AE EHQ++  K
Sbjct:   50 FGLGCFWGAERLFWQLPGVFSTAAGYAGGGVPYPTYREVCSGETGHAEVVLVVYDHTVISFEQLLQTFWESHDPTQGMRQGNDIGTQYRSVIHCTTSEQYAAASASREVYQQQLNTAGYTAITTEILHPAPPFYYAENEHQQYLAK 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_XYLFM (Peptide methionine sulfoxide reductase msrA OS=Xylella fastidiosa (strain M12) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 61/146 (41.78%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  174 FALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMK----SKSSIVTTQIQQLVAFYPAEPEHQKFELK 587
            F LG FW +E +F  L GV  T  GYAGG    P +R +      HAE V V YD  VI+F QLL+ FW SHD  Q   QG D+G QYRS+I    +E+   A+ S+E  Q +      ++I T  +     FY AE EHQ++  K
Sbjct:   50 FGLGCFWGAERLFWQLPGVFSTAAGYAGGGVPYPTYREVCSGETGHAEVVLVVYDHTVISFEQLLQTFWESHDPTQGMRQGNDIGTQYRSVIHCTTSEQYAAASASREVYQQQLNTAGYTAITTEILHPAPPFYYAENEHQQYLAK 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_XYLF2 (Peptide methionine sulfoxide reductase msrA OS=Xylella fastidiosa (strain M23) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 61/146 (41.78%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  174 FALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMK----SKSSIVTTQIQQLVAFYPAEPEHQKFELK 587
            F LG FW +E +F  L GV  T  GYAGG    P +R +      HAE V V YD  VI+F QLL+ FW SHD  Q   QG D+G QYRS+I    +E+   A+ S+E  Q +      ++I T  +     FY AE EHQ++  K
Sbjct:   50 FGLGCFWGAERLFWQLPGVFSTAAGYAGGGVPYPTYREVCSGETGHAEVVLVVYDHTVISFEQLLQTFWESHDPTQGMRQGNDIGTQYRSVIHCTTSEQYAAASASREVYQQQLNTAGYTAITTEILHPAPPFYYAENEHQQYLAK 195          
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_GEOSL3.731e-2238.93Peptide methionine sulfoxide reductase msrA OS=Geo... [more]
MSRA_CYAP83.731e-2240.52Peptide methionine sulfoxide reductase msrA OS=Cya... [more]
MSRA_BOVIN3.731e-2240.67Peptide methionine sulfoxide reductase OS=Bos taur... [more]
MSRA_LEPBL4.873e-2238.67Peptide methionine sulfoxide reductase msrA OS=Lep... [more]
MSRA2_ANASP4.873e-2242.00Peptide methionine sulfoxide reductase msrA 2 OS=A... [more]
MSRA_VIBVU6.364e-2238.26Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA1_SYNY36.364e-2239.63Peptide methionine sulfoxide reductase msrA 1 OS=S... [more]
MSRA_XYLFT8.312e-2241.78Peptide methionine sulfoxide reductase msrA OS=Xyl... [more]
MSRA_XYLFM8.312e-2241.78Peptide methionine sulfoxide reductase msrA OS=Xyl... [more]
MSRA_XYLF28.312e-2241.78Peptide methionine sulfoxide reductase msrA OS=Xyl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
back to top