FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_PSEAB (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 65/164 (39.63%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  150 GRPLKA--------AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEF----RNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKER---EQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            GRPL A         +F +G FW +E       GV  T VGYAGG   NP +      L  H+E V V Y+P+  +F QLL+VFW +HD  Q   QG D+G QYRS+I+T    +   A  S+E    E  K+    +TT+I  +  FY AE  HQ++ L +NP
Sbjct:   38 GRPLTAPFPAGLQQVLFGMGCFWGAERRLWQQPGVWVTAVGYAGGYTPNPTYDEVCSGLTGHSEVVLVVYNPQETSFEQLLKVFWEAHDPTQGMRQGGDIGTQYRSVIYTFDAAQKAAAMASRENFQAELAKAGYDRITTEIADVPPFYYAEAYHQQY-LAKNP 200          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_PSEAE (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas aeruginosa GN=msrA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 65/164 (39.63%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  150 GRPLKA--------AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEF----RNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKE---REQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            GRPL A         +F +G FW +E       GV  T VGYAGG   NP +      L  H+E V V Y+P+  +F QLL+VFW +HD  Q   QG D+G QYRS+I+T    +   A  S+E    E  K+    +TT+I  +  FY AE  HQ++ L +NP
Sbjct:   38 GRPLTAPFPAGLQQVLFGMGCFWGAERRLWQQPGVWVTAVGYAGGYTPNPTYDEVCSGLTGHSEVVLVVYNPQETSFEQLLKVFWEAHDPTQGMRQGGDIGTQYRSVIYTFDAAQKAAAMASRESFQAELAKAGYDRITTEIADVPPFYYAEAYHQQY-LAKNP 200          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_PSEA8 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas aeruginosa (strain LESB58) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 65/164 (39.63%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  150 GRPLKA--------AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEF----RNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKE---REQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            GRPL A         +F +G FW +E       GV  T VGYAGG   NP +      L  H+E V V Y+P+  +F QLL+VFW +HD  Q   QG D+G QYRS+I+T    +   A  S+E    E  K+    +TT+I  +  FY AE  HQ++ L +NP
Sbjct:   38 GRPLTAPFPAGLQQVLFGMGCFWGAERRLWQQPGVWVTAVGYAGGYTPNPTYDEVCSGLTGHSEVVLVVYNPQETSFEQLLKVFWEAHDPTQGMRQGGDIGTQYRSVIYTFDAAQKAAALASRESFQAELAKAGYDRITTEIADVPPFYYAEAYHQQY-LAKNP 200          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_PHOLL (Peptide methionine sulfoxide reductase msrA OS=Photorhabdus luminescens subsp. laumondii GN=msrA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 57/154 (37.01%), Postives = 87/154 (56.49%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKER----EQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++ A F +G FW  E +F     +  T+ GY+GG+  NP +      L  HAE V++ YDP   ++  LL++FW +HD  Q   QG D+G+QYRS I+T   ++  LA  S+E      Q +S +  +TT+I +   FY AE  HQ++ L +NP
Sbjct:   44 MEVAYFGMGCFWGVERLFWQQPDIYTTSAGYSGGTTANPTYEEICSGLTGHAEVVRIVYDPAKNSYENLLKLFWENHDPAQGMRQGGDIGSQYRSAIYTVSPQQHELALASREHFQKAMQQQSDNRPITTEITEAGPFYFAEDYHQQY-LFKNP 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_NITWN (Peptide methionine sulfoxide reductase msrA OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 59/144 (40.97%), Postives = 80/144 (55.56%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHS-KEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            AV A G FW  +A+     GV+ T VGY GG   +  +RN GDHAE+++V +DP V ++RQLLE F+  HD      QG D G  YRS IF    E+ R+A  +  E +        V T ++    F+ AEPEHQ + L+R P
Sbjct:    8 AVLAGGCFWGMQALLRRYPGVISTRVGYTGGDVPDATYRNHGDHAEAIEVNFDPTVTSYRQLLEFFFQIHDPTTEDRQGYDQGLSYRSAIFYTNEEQKRIAEETIAEIDASGLWPGYVVTDVEPAGPFWEAEPEHQDY-LERVP 150          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_METHJ (Peptide methionine sulfoxide reductase msrA OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 57/145 (39.31%), Postives = 81/145 (55.86%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLA-AHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELK 587
            A FA G FW  EA F  + GV+ T VGY GG    P ++ +      HAE++ +EYD   I +R+LLE+F++ H+  +V  QGPDVG+QYRS+IF    E+   A     E  Q     + + T++     F+PAE  HQ + LK
Sbjct:    4 AFFAGGCFWGIEAGFQKVPGVINTKVGYMGGHTIEPTYQEVCSDTTGHAETIALEYDDTAITYRKLLEIFFSLHNPTEVNRQGPDVGSQYRSVIFYTSPEQKEEAEMFIAEMNQSGRYHAAIATEVVPAETFWPAEEYHQSYFLK 148          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBY (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain AYE) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 56/150 (37.33%), Postives = 88/150 (58.67%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++ A+F  G FW  EAVF  + GV + T GYAGG  T+P +  +  GD  HAE V +++D + + + QLL+VF+ +HD   +  QG D+G QYRS+I+    E+ + A H+   + +K     + T++     FYPAE  HQ +  ++NP
Sbjct:    1 MQQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHT--IQTLKDDDLDIVTELSPAPTFYPAEDYHQNY-YEKNP 147          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBT (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=msrA PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 56/150 (37.33%), Postives = 88/150 (58.67%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++ A+F  G FW  EAVF  + GV + T GYAGG  T+P +  +  GD  HAE V +++D + + + QLL+VF+ +HD   +  QG D+G QYRS+I+    E+ + A H+   + +K     + T++     FYPAE  HQ +  ++NP
Sbjct:    1 MQQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHT--IQTLKDDDLDIVTELSPTPTFYPAEDYHQNY-YEKNP 147          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBS (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain SDF) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 56/150 (37.33%), Postives = 88/150 (58.67%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++ A+F  G FW  EAVF  + GV + T GYAGG  T+P +  +  GD  HAE V +++D + + + QLL+VF+ +HD   +  QG D+G QYRS+I+    E+ + A H+   + +K     + T++     FYPAE  HQ +  ++NP
Sbjct:    1 MQQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHT--IQTLKDDDLDIVTELSPAPTFYPAEDYHQNY-YEKNP 147          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBC (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain ACICU) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 56/150 (37.33%), Postives = 88/150 (58.67%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++ A+F  G FW  EAVF  + GV + T GYAGG  T+P +  +  GD  HAE V +++D + + + QLL+VF+ +HD   +  QG D+G QYRS+I+    E+ + A H+   + +K     + T++     FYPAE  HQ +  ++NP
Sbjct:    1 MQQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHT--IQTLKDDDLDIVTELSPAPTFYPAEDYHQNY-YEKNP 147          
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_PSEAB8.312e-2239.63Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_PSEAE1.086e-2139.63Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_PSEA81.086e-2139.63Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_PHOLL1.086e-2137.01Peptide methionine sulfoxide reductase msrA OS=Pho... [more]
MSRA_NITWN1.086e-2140.97Peptide methionine sulfoxide reductase msrA OS=Nit... [more]
MSRA_METHJ1.086e-2139.31Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_ACIBY1.086e-2137.33Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIBT1.086e-2137.33Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIBS1.086e-2137.33Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIBC1.086e-2137.33Peptide methionine sulfoxide reductase msrA OS=Aci... [more]

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Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
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