FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ACIB5 (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain AB0057) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 56/150 (37.33%), Postives = 88/150 (58.67%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++ A+F  G FW  EAVF  + GV + T GYAGG  T+P +  +  GD  HAE V +++D + + + QLL+VF+ +HD   +  QG D+G QYRS+I+    E+ + A H+   + +K     + T++     FYPAE  HQ +  ++NP
Sbjct:    1 MQQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHT--IQTLKDDDLDIVTELSPAPTFYPAEDYHQNY-YEKNP 147          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ACIB3 (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain AB307-0294) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 56/150 (37.33%), Postives = 88/150 (58.67%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++ A+F  G FW  EAVF  + GV + T GYAGG  T+P +  +  GD  HAE V +++D + + + QLL+VF+ +HD   +  QG D+G QYRS+I+    E+ + A H+   + +K     + T++     FYPAE  HQ +  ++NP
Sbjct:    1 MQQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHT--IQTLKDDDLDIVTELSPAPTFYPAEDYHQNY-YEKNP 147          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_OCHA4 (Peptide methionine sulfoxide reductase msrA OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 62/164 (37.80%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  150 GRPLKA--------AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKS---SIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            GRPLK          +F +G FW +E +F  + GV  T VGYAGG   NP +      L  HAE V V YDP+V++  +LL +FW  HD  Q   QG D+G  YRS+I+T    +  +A  S+E             +TT+I+     Y AE  HQ++ L +NP
Sbjct:   37 GRPLKGPWPEGYKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGVTPNPTYEETCTGLTGHAEVVLVVYDPKVVSLDELLTLFWEEHDPTQGMRQGNDIGTTYRSVIYTFDKTDRDVAEKSREAYSQALAGRGLGPITTEIEDAPELYYAEDYHQQY-LAKNP 199          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_CLOB6 (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain 657 / Type Ba4) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 59/150 (39.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFR----NLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +K  V A G FW  E     + G+V T VGYA G K NP ++        HAE+  ++YD  +I+  +LL  FW   D   +  QG D G QYR+ IF    ++  +   SK REQ   K +IV T+++ L  FY AE  HQK+ LK+NP
Sbjct:    1 MKEIVLAGGCFWGVEEYMSRIKGIVETKVGYANGIKENPSYKVVCSGTTGHAEACYIKYDESIISLEELLNKFWNIIDPTVLNKQGNDRGTQYRTGIFYLNEKDLNIITESKSREQKNYKKAIV-TEVEPLKCFYEAEEYHQKY-LKKNP 148          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_AZOVD (Peptide methionine sulfoxide reductase msrA OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=msrA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 63/153 (41.18%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKER---EQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++ A+F LG FW +E  F    GV  T VGYAGG   NP +      L  H E V V +DP+  ++R LL+VFW  HD  Q   QG D+G QYRS I+     +   A  S+ER   E  K+    VTT+I     FY AE  HQ++ L +NP
Sbjct:   49 MRQALFGLGCFWGAERRFWQQPGVWTTAVGYAGGLTPNPTYEEVCSGLTGHTEVVLVVFDPQETDYRTLLKVFWEIHDPTQGMRQGNDIGTQYRSAIYCFDASQRASAEASRERFQAELAKAGYGPVTTEIADAPPFYYAEDYHQQY-LAKNP 200          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_XYLFA (Peptide methionine sulfoxide reductase msrA OS=Xylella fastidiosa GN=msrA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 60/146 (41.10%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  174 FALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMK----SKSSIVTTQIQQLVAFYPAEPEHQKFELK 587
            F LG FW +E +F  L GV  T  GYAGG    P +R +      HAE V V YD  VI+F QLL+ FW SHD  Q   QG D+G QYRS+I    +++   A+ S+E  Q +      ++I T  +     FY AE EHQ++  K
Sbjct:   50 FGLGCFWGAERLFWQLPGVFSTAAGYAGGGVPYPTYREVCSGETGHAEVVLVVYDHTVISFEQLLQTFWESHDPTQGMRQGNDIGTQYRSVIHCTTSKQYAAASTSREVYQQQLNTAGYTAITTEILHPAPPFYYAENEHQQYLAK 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 53/144 (36.81%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKF 578
            L+ A FA G FW  E  F  + GVV+T VGY+ G+  +P ++ +     +HAE++++++DP V  +  LL +FW+ HD   +  QG DVG QYRS I+     +++LA  S E +Q +     + T+I     FY AE  HQ++
Sbjct:   28 LEFAQFAAGCFWGVELAFQRVGGVVKTEVGYSQGNVHDPNYKLICSGTTEHAEAIRIQFDPNVCPYSNLLSLFWSRHDPTTLNRQGNDVGKQYRSGIYYYNDAQAQLARESLEAKQKEFMDKKIVTEILPAKRFYRAEEYHQQY 171          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA3_RHIME (Peptide methionine sulfoxide reductase msrA 3 OS=Rhizobium meliloti GN=msrA3 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 56/146 (38.36%), Postives = 83/146 (56.85%), Query Frame = 3
Query:  162 KAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHS-KEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            K AV A G FW  + +   L GV+ T VGY GG   N  +RN G HAE +++ +DP  I++R++LE+F+  HD      QG D+G  YRS I+    E+ R+A  +  + E        V T+++ +  F+ AEPEHQ + L+R P
Sbjct:    3 KRAVLAGGCFWGMQDLIRKLPGVIETRVGYTGGDVPNATYRNHGTHAEGIEIIFDPERISYRRILELFFQIHDPTTKDRQGNDIGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPGKVVTEVEPVRDFWEAEPEHQNY-LERYP 147          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21
Identity = 60/164 (36.59%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  123 VSTSVNDELGRP-LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++   +D++  P  + A F  G FW  E  F  + GV +T VGY  G   NP + ++     +H+E V+V+YDP+  +F  LL+ FW  HD   +  QG DVG QYRS I+    E+ + A  +KER Q K   ++V T+I     FY AE  HQ++  K   F
Sbjct:   79 IAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVSKTEVGYTQGFLHNPTYNDICSGTTNHSEVVRVQYDPKACSFDSLLDCFWERHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAIEAKERHQKKLNRTVV-TEILPAKKFYRAEEYHQQYLAKGGRF 241          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_HALSA (Peptide methionine sulfoxide reductase msrA OS=Halobacterium salinarium GN=msrA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21
Identity = 58/150 (38.67%), Postives = 82/150 (54.67%), Query Frame = 3
Query:  162 KAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEE-SRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            + A    G FW +EA    L GV   T GYAGG   +P +R++      HAE VQVEYD   + +  +LEVF+T HD   V  +GPDVG+QYRSI+  +  ++  R  A   E     +    + T+I+ L  FYPA  +HQ +  ++NP
Sbjct:    4 ETATLGGGCFWCTEAAMEELAGVTDVTSGYAGGDTADPSYRDVCSGTTGHAEVVQVEYDTAELAYEDVLEVFFTVHDPTTVDREGPDVGSQYRSIVLPHDDQQHERATAFVDELAAADAFDGSIVTEIEPLETFYPAAEKHQNY-FEKNP 152          
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_ACIB51.086e-2137.33Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIB31.086e-2137.33Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_OCHA41.418e-2137.80Peptide methionine sulfoxide reductase msrA OS=Och... [more]
MSRA_CLOB61.418e-2139.33Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_AZOVD1.418e-2141.18Peptide methionine sulfoxide reductase msrA OS=Azo... [more]
MSRA_XYLFA2.418e-2141.10Peptide methionine sulfoxide reductase msrA OS=Xyl... [more]
MSRA_SOLLC2.418e-2136.81Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA3_RHIME2.418e-2138.36Peptide methionine sulfoxide reductase msrA 3 OS=R... [more]
MSRA_LACSA3.158e-2136.59Peptide methionine sulfoxide reductase OS=Lactuca ... [more]
MSRA_HALSA3.158e-2138.67Peptide methionine sulfoxide reductase msrA OS=Hal... [more]

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Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
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