FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_HALS3 (Peptide methionine sulfoxide reductase msrA OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=msrA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21
Identity = 58/150 (38.67%), Postives = 82/150 (54.67%), Query Frame = 3
Query:  162 KAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEE-SRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            + A    G FW +EA    L GV   T GYAGG   +P +R++      HAE VQVEYD   + +  +LEVF+T HD   V  +GPDVG+QYRSI+  +  ++  R  A   E     +    + T+I+ L  FYPA  +HQ +  ++NP
Sbjct:    4 ETATLGGGCFWCTEAAMEELAGVTDVTSGYAGGDTADPSYRDVCSGTTGHAEVVQVEYDTAELAYEDVLEVFFTVHDPTTVDREGPDVGSQYRSIVLPHDDQQHERATAFVDELAAADAFDGSIVTEIEPLETFYPAAEKHQNY-FEKNP 152          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_PSE14 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=msrA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.125e-21
Identity = 57/150 (38.00%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEE---SRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            A+F LG FW +E       GVV T VGYAGG   NP +      L  H E V V Y+P  I+++ LL+VFW +H+  Q   QG D+G QYRS+I+    ++   ++ +A   + E  K+    +TT+I++    Y AE  HQ++ L +NP
Sbjct:   52 AIFGLGCFWGAERRLWQQEGVVSTVVGYAGGFTPNPTYEEVCSGLTAHTEVVLVVYEPEKISYKSLLKVFWEAHNPTQGMRQGNDIGTQYRSVIYCTTPKQLDAAKASAAEFQAELRKAGLGAITTEIEEAPTVYFAEAYHQQY-LAKNP 200          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_OCHAN (Peptide methionine sulfoxide reductase msrA OS=Ochrobactrum anthropi GN=msrA PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.125e-21
Identity = 58/152 (38.16%), Postives = 81/152 (53.29%), Query Frame = 3
Query:  162 KAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKS---SIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            K  +F +G FW +E +F  + GV  T VGYAGG   NP +      L  HAE V V YDP+V++  +LL +FW  HD  Q   QG D+G  YRS+I+T    +  +A  S+E             +TT+I+     Y AE  HQ++ L +NP
Sbjct:   49 KQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGVTPNPTYEETCTGLTGHAEVVLVVYDPKVVSLDELLTLFWEEHDPTQGMRQGNDIGTTYRSVIYTFDKADRDVAEKSREAYSQALAGRGLGPITTEIEDAPELYYAEDYHQQY-LAKNP 199          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_LEIXX (Peptide methionine sulfoxide reductase msrA OS=Leifsonia xyli subsp. xyli GN=msrA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.125e-21
Identity = 58/145 (40.00%), Postives = 80/145 (55.17%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHS-KEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            A+ A G FW  + +     GV+RT VGY GG   N  +RN G HAE++++E+DP  I +R LLE F+  HD      QG DVG  YRS IF    E+ R+A  +  E +     S  V T++     F+ A PEHQ + L+R P+
Sbjct:    5 AILAGGCFWGMQDLIRKRPGVLRTRVGYTGGDVPNATYRNHGSHAEAIEIEFDPSRIGYRDLLEFFFQIHDPSTANRQGNDVGASYRSAIFYEDEEQRRVAEETIAEVDASGLWSGKVVTEVSPAGPFWEAGPEHQDY-LERIPW 148          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_PSEU2 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=msrA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 56/150 (37.33%), Postives = 83/150 (55.33%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEE---SRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            A+F +G FW +E       GVV T  GYAGG   NP +      L  H E V V Y+P  I++ +LL+VFW  H+  Q   QG D+G QYRS+I+    E+   ++ +A + + +  K+    +TT+I+Q    Y AE  HQ++ L +NP
Sbjct:   52 AIFGMGCFWGAERRLWQQEGVVSTVAGYAGGFTPNPTYEEVCSGLTGHTEVVLVVYEPAKISYEELLKVFWEVHNPTQGMRQGNDIGTQYRSVIYCTTPEQLDAAKASAETFQAQLNKAGKGTITTEIEQAPTVYFAEAYHQQY-LAKNP 200          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_PASMU (Peptide methionine sulfoxide reductase msrA OS=Pasteurella multocida GN=msrA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 57/147 (38.78%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            A+FA G FW  EAVF  + GV + T GY  G+  NP ++ +      HAE+V+VE+D  VI++ +LL++F++ H+  Q+  QG DVG QYR+ I+    E+ +L A+ K  E     +  + T++     FYPAE  HQ + L +NP
Sbjct:    5 AIFAGGCFWCVEAVFNQIKGVEKATSGYINGTTENPTYKEVCTGETGHAEAVKVEFDATVISYEKLLDIFFSIHNPTQLNHQGEDVGTQYRTGIYYLNDEQEQL-ANKKIAELQPHFAEKIVTEVLPAQTFYPAEDYHQGY-LLQNP 149          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_CORK4 (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=msrA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = 3
Query:  162 KAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEE---SRLAAHSKEREQMKSKSSIVTTQIQQL-----VAFYPAEPEHQKFELKRNP 596
            ++ V  LG FW +E +F  ++GV  T VGYAGG   NP +R +      HAE+V+V YDP+ ++F  L+  F+ +HD  Q F QG DVG QYRS+I+    +E   +R  A S       +    +TT I  L        Y AE EHQ++ L +NP
Sbjct:   51 RSVVVGLGCFWGAEKLFWQIDGVESTAVGYAGGYTPNPTYREVCTGRTGHAETVRVIYDPQEVSFEDLIRTFFEAHDPTQGFRQGNDVGTQYRSVIYAQTDDEVQKAREIAESFSHSLADAGYGGITTDISLLSDTPTKTMYLAEDEHQQY-LDKNP 206          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ERWT9 (Peptide methionine sulfoxide reductase msrA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.036e-21
Identity = 56/141 (39.72%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKF 578
            A+ A G FW +EAVF  ++GVV    GY GG   NP ++ +  GD  HAE++++ +DP  ++F  LL++ + +HD  Q+  QG D+G QYRS IF    E+   A  +  R Q +   +IVTT I+    +YPAE  HQ +
Sbjct:    6 AIIAGGCFWCTEAVFKQIHGVVSVESGYIGGHTENPTYKQVCGGDTGHAEAIRIGFDPEKVSFGDLLDISFATHDPTQLNRQGNDIGTQYRSAIFPVSEEQLEEAKMAIARAQSEHNDAIVTT-IEAHSTWYPAEDYHQDY 145          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ACIC5 (Peptide methionine sulfoxide reductase msrA OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.036e-21
Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK-SSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIHL 611
            A F  G FW  EA F  L+GV     GY GG   NP +R+    L  HAE V+++++P  I F QLLE F+  HD  Q+  QGPD G QYRS+IF +  E+  +A    +R   + +    + TQ+     F+ AE  HQ++  KR     H+
Sbjct:    4 ATFGAGCFWGVEASFRQLHGVQDVAAGYEGGKLDNPTYRDVCTDLTGHAEVVEIDFNPDEIRFEQLLEAFFGLHDPTQLNRQGPDWGTQYRSVIFYHSPEQQTVAQAFIDRLTAEKRFPRPIVTQVVPAATFWRAEEYHQRYLEKRGLATCHI 156          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_PSEMY (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas mendocina (strain ymp) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21
Identity = 62/154 (40.26%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  156 PLKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQM---KSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            P++ AVF LG FW +E  F    GV  T VGYAGG   NP +      L  H E V V +DP+  +F  LL+VFW +H+  Q   QG D G QYRS I+     +   A  S+ R Q    K+    +TT+I +   FY AE  HQ++ L +NP
Sbjct:   48 PMQQAVFGLGCFWGAERRFWQQPGVFSTAVGYAGGFTPNPTYEEVCSGLTGHTEVVLVVFDPQQTSFDALLKVFWEAHNPTQGMRQGNDQGTQYRSAIYCQDHAQLEAALASQARFQAELDKAGLGSITTEICEAPIFYYAETYHQQY-LAKNP 200          
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_HALS33.158e-2138.67Peptide methionine sulfoxide reductase msrA OS=Hal... [more]
MSRA_PSE144.125e-2138.00Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_OCHAN4.125e-2138.16Peptide methionine sulfoxide reductase msrA OS=Och... [more]
MSRA_LEIXX4.125e-2140.00Peptide methionine sulfoxide reductase msrA OS=Lei... [more]
MSRA_PSEU25.388e-2137.33Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_PASMU5.388e-2138.78Peptide methionine sulfoxide reductase msrA OS=Pas... [more]
MSRA_CORK45.388e-2138.85Peptide methionine sulfoxide reductase msrA OS=Cor... [more]
MSRA_ERWT97.036e-2139.72Peptide methionine sulfoxide reductase msrA OS=Erw... [more]
MSRA_ACIC57.036e-2137.91Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_PSEMY9.190e-2140.26Peptide methionine sulfoxide reductase msrA OS=Pse... [more]

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Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
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