FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECOLU (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3 
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQY-LHKNPY 196
[Close]
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECOLI (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12) GN=msrA PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3 
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196
[Close]
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECOLC (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3 
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196
[Close]
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECOHS (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O9:H4 (strain HS) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3 
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196
[Close]
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECODH (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12 / DH10B) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3 
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196
[Close]
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECOBW (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12 / BW2952) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3 
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196
[Close]
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECO8A (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O8 (strain IAI1) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3 
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196
[Close]
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECO81 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O81 (strain ED1a) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3 
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQY-LHKNPY 196
[Close]
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECO7I (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3 
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQY-LHKNPY 196
[Close]
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECO55 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain 55989 / EAEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3 
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_ECOLU1.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOLI1.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOLC1.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOHS1.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECODH1.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOBW1.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO8A1.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO811.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO7I1.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO551.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
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