FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_XANOP (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=msrA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.119e-17
Identity = 54/146 (36.99%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  174 FALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIF--TNGTEESRLAAHSKEREQMKSKS-SIVTTQIQ-QLVAFYPAEPEHQKFELK 587
            F LG FW +E  F  + GV  T  GYAGG   N  +  +      H E+V V +D + ++F  LL  FW SHD  Q   QG DVG QYRS I+  T     + LA+    ++Q+ +     +TT+I      FY AE +HQ++  K
Sbjct:   50 FGLGCFWGAERKFWKVPGVYTTAAGYAGGQTPNATYSEVCSGQTGHTEAVLVVFDEQAVSFEHLLRTFWESHDPTQGMQQGNDVGTQYRSAIYCTTQAQYAAALASRDAYQQQLTAAGYGAITTEIGFPAPTFYYAEDDHQQYLAK 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_XANOM (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=msrA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.119e-17
Identity = 54/146 (36.99%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  174 FALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIF--TNGTEESRLAAHSKEREQMKSKS-SIVTTQIQ-QLVAFYPAEPEHQKFELK 587
            F LG FW +E  F  + GV  T  GYAGG   N  +  +      H E+V V +D + ++F  LL  FW SHD  Q   QG DVG QYRS I+  T     + LA+    ++Q+ +     +TT+I      FY AE +HQ++  K
Sbjct:   50 FGLGCFWGAERKFWKVPGVYTTAAGYAGGQTPNATYSEVCSGQTGHTEAVLVVFDEQAVSFEHLLRTFWESHDPTQGMQQGNDVGTQYRSAIYCTTQAQYAAALASRDAYQQQLTAAGYGAITTEIGFPAPTFYYAEDDHQQYLAK 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_CHRVO (Peptide methionine sulfoxide reductase msrA OS=Chromobacterium violaceum GN=msrA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.119e-17
Identity = 53/147 (36.05%), Postives = 78/147 (53.06%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIF---TNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKF 578
            ++ A+   G FW  EA F  L GV R   GY GG   +P++R +  GD  H E V++ YDP +I++  LL+VF+  HD   +  QG DVG QY S IF       E +R      + EQ+    + + T+++    F+PAE  HQ +
Sbjct:    1 MEKAILGGGCFWCLEAAFSQLKGVERVVSGYCGGHTDSPDYRQVCSGDSGHVEVVEISYDPALIDYATLLQVFFAVHDPTTLNRQGHDVGTQYASAIFYLDETQRECARRVIAQLDAEQI--FDAPIVTRVESAPRFHPAEDYHQNY 145          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_TRIEI (Peptide methionine sulfoxide reductase msrA OS=Trichodesmium erythraeum (strain IMS101) GN=msrA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17
Identity = 52/161 (32.30%), Postives = 84/161 (52.17%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAH-SKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIHLMGNLP 626
            L   V   G FW  E+VF  + GV     GYAGG+  NP++R++      HAE V+V +D   I+  Q+LE+F+ +HD      QG DVG QYRS++  +  E+  +A           +  + + T++  L  +Y AE  HQ +   +NP+  + + ++P
Sbjct:    2 LDTIVLGGGCFWCVESVFLSVVGVKEVESGYAGGNTKNPDYRSICSGKTGHAEVVKVSFDTEKISLSQILEIFFATHDPTTPNRQGNDVGTQYRSVVMCHSQEQKDIAQEVISTLGNNGTFENPIVTEVVDLKDYYRAEEYHQNY-FNKNPYQPYCVFSIP 161          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_CLOPH (Peptide methionine sulfoxide reductase msrA OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=msrA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17
Identity = 52/149 (34.90%), Postives = 79/149 (53.02%), Query Frame = 3
Query:  162 KAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEF----RNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            K    A G FW  E  F  ++GV+ T VGYA G+ +NP +     N   HAE+V+++YD  ++   +LL +++   D   V  QG D G QYR+ I+     +  +   S E E  K     +  +++QL+ FY AE  HQK+ L +NP
Sbjct:    3 KTIYIAAGCFWGGEKYFSLIHGVLSTKVGYANGTTSNPTYEEVCHNNTGHAETVEIQYDDSILPLEKLLRLYYEVIDPTSVNKQGGDQGIQYRTGIYYIDEADLEIIKPSLE-ELAKKYDKPIAIEVKQLLHFYDAEEYHQKY-LDKNP 149          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_RUTMC (Peptide methionine sulfoxide reductase msrA OS=Ruthia magnifica subsp. Calyptogena magnifica GN=msrA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 51/144 (35.42%), Postives = 77/144 (53.47%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKF 578
            ++   FA G FW  EA+F  + GVV+ T GY  G+  +P ++++      HAE V+VE+    ++F+ LL +F+  H+      QG D G QYRS IF    E+      S+  + +   S  + TQI +L  FYPAE  HQ +
Sbjct:    1 MQITYFAGGCFWCVEAIFQRIEGVVKLTSGYCNGNTVDPTYQDICTGTTGHAEVVKVEFYELKVSFKTLLNIFFEIHNPTTKNQQGNDRGTQYRSAIFYTNDEQ-----QSQAIDMVNQMSDKIVTQIIKLDVFYPAENYHQNY 139          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA1_RHIME (Peptide methionine sulfoxide reductase msrA 1 OS=Rhizobium meliloti GN=msrA1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 58/167 (34.73%), Postives = 84/167 (50.30%), Query Frame = 3
Query:  150 GRPL--------KAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSI------VTTQIQQLVAFYPAEPEHQKFELKRNP 596
            GRPL        K  +F +G FW +E +   + GV  T  GY+GG   NP ++     L  H E V V YDP  ++ ++LL+ F+  HD  Q   QG DVG  YRS I+    +E +LA  +  R   +    +      +TT+I +   FY AE  HQ++ L +NP
Sbjct:   37 GRPLQGPYPEGMKKVLFGMGCFWGAERLLWEIPGVYVTAAGYSGGLTPNPTYQETTTGLTGHTEVVLVVYDPAKVSLQRLLKTFFEEHDPTQGMRQGNDVGTTYRSAIYV--YDEEQLAEANAARNAFQKALRVYNHDREITTEIAKAGPFYFAEDYHQQY-LAKNP 200          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_CORDI (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium diphtheriae GN=msrA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.164e-17
Identity = 58/165 (35.15%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  150 GRPLKAAVF-ALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKE-REQMKSKSSI-----VTTQIQQLVA-----FYPAEPEHQKFELKRNP 596
            G+P    ++  +G +W +E +F    GVV T+VG+AGG   NP +R       +H E V+V YDP  + F +L+     +HD  Q + QG D G QYRS I+T G    + A  ++E  E    K +      +TT+I  L +     +Y AE EHQ++ L +NP
Sbjct:   39 GQPGTETIYIGIGCYWGAEKLFWETPGVVYTSVGFAGGITPNPTYRETCTGRTNHTEIVEVVYDPTQVTFDELVVKAMEAHDPTQGYRQGNDTGTQYRSAIYTAGPNAEQQAQRAREIVEHYAPKLAAAGLGRITTEILPLASTPAGEYYMAEDEHQQY-LHKNP 202          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_STRP1 (Peptide methionine sulfoxide reductase msrA OS=Streptococcus pyogenes serotype M1 GN=msrA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.051e-17
Identity = 49/151 (32.45%), Postives = 75/151 (49.67%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK-SSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++ A+FA G FW     F    G++    GY GG   NP +  +      H E+V++ +DP+ I ++ L+E++WT  D    FGQ  D G+ YR +I+     +  +A  SK   Q   +    + T I+    FY AE  HQ F  K+NP
Sbjct:    1 MERAIFAGGCFWCMVQPFEEQAGILSVRSGYTGGHLPNPSYEQVCAKTTGHTEAVEIIFDPKQIAYKDLVELYWTQTDPTDAFGQFEDRGDNYRPVIYYTTERQKEIAEQSKANLQASGRFDQPIVTTIEPAEPFYLAEDYHQGF-YKKNP 150          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_STRPM (Peptide methionine sulfoxide reductase msrA OS=Streptococcus pyogenes serotype M28 GN=msrA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 48/151 (31.79%), Postives = 75/151 (49.67%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK-SSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++ A+FA G FW     F    G++    GY GG   NP +  +      H E+V++ +DP  I++++L+E++W   D    FGQ  D G+ YR +I+     +  +A  SK   Q   +    + T I+    FY AE  HQ F  K+NP
Sbjct:    1 MERAIFAGGCFWCMVQPFEEQAGILSVRSGYTGGHLPNPSYEQVCAKTTGHTEAVEIIFDPEEISYKELVELYWVQTDPTDAFGQFEDRGDNYRPVIYYTTERQKEIAEQSKANLQASGRFDQPIVTTIEPAEPFYLAEDYHQGF-YKKNP 150          
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_XANOP2.119e-1736.99Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_XANOM2.119e-1736.99Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_CHRVO2.119e-1736.05Peptide methionine sulfoxide reductase msrA OS=Chr... [more]
MSRA_TRIEI2.767e-1732.30Peptide methionine sulfoxide reductase msrA OS=Tri... [more]
MSRA_CLOPH2.767e-1734.90Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_RUTMC3.614e-1735.42Peptide methionine sulfoxide reductase msrA OS=Rut... [more]
MSRA1_RHIME3.614e-1734.73Peptide methionine sulfoxide reductase msrA 1 OS=R... [more]
MSRA_CORDI6.164e-1735.15Peptide methionine sulfoxide reductase msrA OS=Cor... [more]
MSRA_STRP18.051e-1732.45Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA_STRPM1.373e-1631.79Peptide methionine sulfoxide reductase msrA OS=Str... [more]

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Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
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