FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECO45 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECO24 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SERP5 (Peptide methionine sulfoxide reductase msrA OS=Serratia proteamaculans (strain 568) GN=msrA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 62/154 (40.26%), Postives = 91/154 (59.09%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            L+ A+FA+G FW  E +F    GV  T  GY+GG   NP +R +      H E V+V +DP++I+++QLL+VFW +HD  Q   QG DVG QYRS I+T   E+   A  S +R Q   + +     +TT++   + FY AE +HQ++ L +NP
Sbjct:   44 LEVAIFAMGCFWGVERLFWQQQGVYSTAAGYSGGYTPNPTYREVCSGQTGHTEVVRVVFDPKIISYKQLLQVFWENHDPAQGMRQGGDVGTQYRSAIYTLTPEQQTEAESSLQRFQQAMEQAGDKRAITTEVAPALPFYYAEDDHQQY-LYKNP 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALTI (Peptide methionine sulfoxide reductase msrA OS=Salmonella typhi GN=msrA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALPK (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi A (strain AKU_12601) GN=msrA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALPC (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi C (strain RKS4594) GN=msrA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALPA (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi A GN=msrA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALHS (Peptide methionine sulfoxide reductase msrA OS=Salmonella heidelberg (strain SL476) GN=msrA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALG2 (Peptide methionine sulfoxide reductase msrA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=msrA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALEP (Peptide methionine sulfoxide reductase msrA OS=Salmonella enteritidis PT4 (strain P125109) GN=msrA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQY-LHKNPY 196          
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_ECO451.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO241.618e-2542.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_SERP52.114e-2540.26Peptide methionine sulfoxide reductase msrA OS=Ser... [more]
MSRA_SALTI2.114e-2541.94Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALPK2.114e-2541.94Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALPC2.114e-2541.94Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALPA2.114e-2541.94Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALHS2.114e-2541.94Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALG22.114e-2541.94Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALEP2.114e-2541.94Peptide methionine sulfoxide reductase msrA OS=Sal... [more]

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Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
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