FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_UREP2 (Peptide methionine sulfoxide reductase msrA OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=msrA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 47/150 (31.33%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +K+   A G FW  +  F  + GV  T VGY+ G+  NP +  +     +H E+VQ++YD R ++   +LE  +   D   +  QG DVG+QYRS I+    ++  +      ++Q ++   I+  ++++L  F  AE  HQK+ L +NP
Sbjct:    2 IKSIWIAGGCFWGIQKYFDSIIGVNHTVVGYSQGNVINPSYEQVCTQTTNHTETVQIDYDDRFVSLISILEHLYQIIDPFSLNKQGDDVGSQYRSGIYYVDHDDEFIIKDFLLKKQNQTPKKIM-IEVERLRNFNIAEEYHQKY-LDKNP 149          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_MYCGE (Peptide methionine sulfoxide reductase msrA OS=Mycoplasma genitalium GN=msrA PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 45/150 (30.00%), Postives = 78/150 (52.00%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +K   F  G FW  E  F  + GV +T+VGY      NP +  +     +  E+V+VEY+ + I+  +L+E  +   D      QG D+G QYR+ I+   + + ++  + K  +  K+ S  + T+ +++  +Y AE  HQ + LK+NP
Sbjct:    1 MKEIYFGGGCFWGIEKYFQLIKGVKKTSVGYLNSRIRNPSYEQVCSGYTNAVEAVKVEYEEKEISLSELIEALFEVIDPTIRNRQGNDIGTQYRTGIYWTDSSDEKI-INDKFLKLQKNYSKPIVTENKKVENYYLAEEYHQDY-LKKNP 148          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA2_CAUCR (Peptide methionine sulfoxide reductase msrA 2 OS=Caulobacter crescentus GN=msrA2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 49/148 (33.11%), Postives = 71/148 (47.97%), Query Frame = 3
Query:  162 KAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRN 593
            + AVFA G FW  E     + GV++   GY GG   NP +R++      H E+V+V YDP  +++  LL  +W   D     GQ  D G  YR  +F    +   +A  S+     + K+  + TQI     FY AE  H+ +  KRN
Sbjct:   28 ETAVFAGGCFWCMEHDMQGVPGVLKVESGYTGGHLKNPTYRDVTSETSGHYEAVRVTYDPAKLDYGFLLYRYWRLVDPTDDGGQFCDRGPSYRPAVFVTPAQRP-IAEKSRTEAAKRLKTGTMKTQILPAQTFYLAEEYHRDY-AKRN 173          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRAB_HAEIN (Peptide methionine sulfoxide reductase msrA/msrB OS=Haemophilus influenzae GN=msrAB PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 50/148 (33.78%), Postives = 75/148 (50.68%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGS--KTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++    A G FW  EA    ++GV     GYA G+  KT+ +   L DHAE+V+V YD   I+  +LL+ ++   D   V  QG D G QYR+ I+     +  +   +  + Q K K   V  ++Q L  +  AE  HQ + LK+NP
Sbjct:   42 IREIYLAGGCFWGMEAYMERIHGVKDAISGYANGNTEKTSYQMIGLTDHAETVKVTYDANQISLDKLLKYYFKVIDPTSVNKQGNDRGRQYRTGIYYQDGADKAVIGQALAQLQTKYKKP-VQIEVQPLKNYIVAEEYHQDY-LKKNP 187          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_MYCPN (Peptide methionine sulfoxide reductase msrA OS=Mycoplasma pneumoniae GN=msrA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 43/150 (28.67%), Postives = 76/150 (50.67%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +K   F  G FW ++  F  + GV +T+VGY   +  NP +  +     +  E+V VEYD   ++  +L++ F+   D      QG D+G QYR+ ++    ++ +L    K RE   +    + T+ + +  ++ AE  HQ + LK+NP
Sbjct:    1 MKQIYFGGGCFWGTQKYFDLIKGVQKTSVGYLNSNMKNPTYEQVCSGQTNAVEAVFVEYDENKVSLNELIDAFFKVIDPTIRNRQGNDIGTQYRTGVYWVDPQDEQLIT-QKFRELQANYPKPIVTENRAMENYFLAEEYHQDY-LKKNP 148          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRAB_AGGAC (Peptide methionine sulfoxide reductase msrA/msrB OS=Aggregatibacter actinomycetemcomitans GN=msrAB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 49/153 (32.03%), Postives = 73/153 (47.71%), Query Frame = 3
Query:  144 ELGRPLKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG--DHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            E  + L     A G FW  EA    + GV     GYA G      ++ +G  DHAE+V+V YD   ++  +LL+ ++   D   V  QG D G QYR+ I+   T +  +        Q K K+ I   +++ L  +  AE  HQ + LK+NP
Sbjct:   40 EAKKDLHEIYLAGGCFWGIEAYMERIYGVEDAISGYANGKSDKTNYQKIGITDHAETVKVTYDRNKVSLDKLLKYYFQVIDPTSVNKQGNDRGRQYRTGIYYQDTADKSIIEKEITALQGKYKNKI-QIEVEPLHNYIVAEEYHQDY-LKKNP 190          
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_UREP27.053e-1331.33Peptide methionine sulfoxide reductase msrA OS=Ure... [more]
MSRA_MYCGE1.571e-1230.00Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA2_CAUCR1.571e-1233.11Peptide methionine sulfoxide reductase msrA 2 OS=C... [more]
MSRAB_HAEIN2.052e-1233.78Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRA_MYCPN4.571e-1228.67Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRAB_AGGAC1.018e-1132.03Peptide methionine sulfoxide reductase msrA/msrB O... [more]

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Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
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