FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALDC (Peptide methionine sulfoxide reductase msrA OS=Salmonella dublin (strain CT_02021853) GN=msrA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALCH (Peptide methionine sulfoxide reductase msrA OS=Salmonella choleraesuis GN=msrA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALA4 (Peptide methionine sulfoxide reductase msrA OS=Salmonella agona (strain SL483) GN=msrA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQAAMAAAGDHRPITTEIAHATPFYYAEDEHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_METAC (Peptide methionine sulfoxide reductase msrA OS=Methanosarcina acetivorans GN=msrA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 64/160 (40.00%), Postives = 91/160 (56.88%), Query Frame = 3
Query:  126 STSVNDELGRPLKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKER-EQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKR 590
            ST + +  G  L+ A FA G FW  E  F  + GVV T VGY+GG    P +  +      HAE+V+V +DP+V++++ LL+VFW  HD      QGPDVG QYRS+IF +  E+   A  SKE  E+     + + T+I  +  FY AE  HQ++  K+
Sbjct:   17 STDIFENPGEGLEKATFAAGCFWGIEEAFRQVKGVVATAVGYSGGHFEKPTYEQVCTLDTGHAEAVRVIFDPKVVSYKNLLDVFWKIHDPTTKNRQGPDVGKQYRSVIFYHNEEQKAAALASKEELEKAGVFKNPIVTEIVPVSEFYMAEDYHQQYFEKK 176          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA1_ANASP (Peptide methionine sulfoxide reductase msrA 1 OS=Anabaena sp. (strain PCC 7120) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 58/146 (39.73%), Postives = 87/146 (59.59%), Query Frame = 3
Query:  156 PLKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSI-VTTQIQQLVAFYPAEPEHQKF 578
            P++ A F  G FW  EA F  + GVV T+VGY GG   NP + +    +  HAE VQ+EYDP+++++  LL VFW  HD   +  QGPD G QYRS+IF +  +++  A  SK + Q+  +  + + T+I+    +Y A  EHQ++
Sbjct:   11 PMEKATFGAGCFWGVEAAFRKVKGVVSTSVGYMGGHFPNPCYLDVLSRITGHAEVVQIEYDPQLVSYEDLLAVFWDIHDPTTLNRQGPDKGEQYRSVIFFHNEQQAEAAQQSKAKVQVSGRFELDIVTEIKHKSEYYLATEEHQQY 156          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALPB (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=msrA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 65/155 (41.94%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI++ QLL++FW +HD  Q   QG D G QYRS I+    E++  A  S ER Q    ++     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVISYEQLLQIFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASCERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_PECCP (Peptide methionine sulfoxide reductase msrA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=msrA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 63/154 (40.91%), Postives = 93/154 (60.39%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQ--MKSKSSI--VTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +  A+FA+G FW  E +F    G+  T  GY GG   NP +R +     DHAE+V+V +DP VI++ QLL++FW +HD  Q   QG D+G+QYRS I+T   E+ + A  S +R Q  M+ K  +  ++T+I     FY AE +HQ++ L +NP
Sbjct:   43 MSVAIFAMGCFWGVERLFWQQPGIYSTAAGYIGGYTPNPTYREVCSGQTDHAEAVRVVFDPAVISYDQLLQLFWENHDPAQGMRQGGDIGSQYRSAIYTLTPEQEQAAQESLQRFQQAMREKGDVRAISTEIVPAGPFYYAEDDHQQY-LYKNP 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ERWCT (Peptide methionine sulfoxide reductase msrA OS=Erwinia carotovora subsp. atroseptica GN=msrA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 61/154 (39.61%), Postives = 91/154 (59.09%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQM----KSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +  A+FA+G FW +E +F    G+  T  GY GG   NP +R +     DHAE+V+V +DP  I++ QLL++FW +HD  Q   QG D+G+QYRS I+T   E+ + A  S +R Q      S    ++T+I+    FY AE +HQ++ L +NP
Sbjct:   43 MSVAIFAMGCFWGAERLFWQQPGIYSTAAGYIGGYTPNPTYREVCSGQTDHAEAVRVVFDPATISYSQLLQLFWENHDPAQGMRQGGDIGSQYRSAIYTLTPEQEQAAQASLQRFQQAMRENSDGRAISTEIEPAGPFYYAEEDHQQY-LHKNP 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_DICD3 (Peptide methionine sulfoxide reductase msrA OS=Dickeya dadantii (strain 3937) GN=msrA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 63/154 (40.91%), Postives = 91/154 (59.09%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++ A+FA+G FW  E +F    GV  T  GY GG   NP +R +      HAE+V+V +DP V+++ QLL++FW +H+  Q   QG D+G QYRS I+T  TE+   A  S +R Q   + +     +TT+IQ    FY AE EHQ++ L +NP
Sbjct:   44 MEVAIFAMGCFWGVERLFWQQPGVYSTASGYCGGYTPNPTYREVCTGKTGHAEAVRVVFDPAVVSYPQLLQLFWENHNPAQGMRQGNDIGTQYRSAIYTLTTEQETAAKESYQRFQQAMRDAGNDHDITTEIQPAGPFYYAEDEHQQY-LHKNP 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_METMA (Peptide methionine sulfoxide reductase msrA OS=Methanosarcina mazei GN=msrA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.709e-25
Identity = 63/159 (39.62%), Postives = 90/159 (56.60%), Query Frame = 3
Query:  129 TSVNDELGRPLKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKER-EQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKR 590
            T + +  G  L+ A FA G FW  E  F  + GVV T VGY+GG    P +  +      HAE+V+V +DP +++++ LL+VFW  HD      QGPDVG QYRS+IF +  E+   A  SKE  E+  +  + V T+I  +  FY AE  HQ++  K+
Sbjct:   41 TEIFENPGEGLEKATFAAGCFWGIEEAFRQIKGVVATAVGYSGGHFKRPTYEQVCTLDTGHAEAVRVIFDPEIVSYKTLLDVFWKIHDPTTKDRQGPDVGKQYRSVIFYHSDEQKAAALASKEELEKSGAFKNPVVTEIVPVSEFYMAEDYHQQYFEKK 199          
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_SALDC2.114e-2541.94Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALCH2.114e-2541.94Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALA42.114e-2541.94Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_METAC2.114e-2540.00Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA1_ANASP2.114e-2539.73Peptide methionine sulfoxide reductase msrA 1 OS=A... [more]
MSRA_SALPB2.761e-2541.94Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_PECCP2.761e-2540.91Peptide methionine sulfoxide reductase msrA OS=Pec... [more]
MSRA_ERWCT2.761e-2539.61Peptide methionine sulfoxide reductase msrA OS=Erw... [more]
MSRA_DICD32.761e-2540.91Peptide methionine sulfoxide reductase msrA OS=Dic... [more]
MSRA_METMA4.709e-2539.62Peptide methionine sulfoxide reductase msrA OS=Met... [more]

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Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
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