FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_METM6 (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=msrA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.709e-25
Identity = 62/153 (40.52%), Postives = 91/153 (59.48%), Query Frame = 3
Query:  162 KAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEF----RNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIH 608
            + AVF +G FWS+E +F  +NGV+ T VG+ GG+  NP +    R    H E V + Y+P+++ +  LLE+FW +HD      QG DVG QY S IF    E+  LA  S E+ Q  S+  IVT  I++   F+PAE  HQK+ +K+N  +++
Sbjct:    5 ETAVFGMGCFWSAEELFRKINGVISTEVGFMGGNIKNPTYGQVCRGRSGHIEVVNIIYNPKILKYDDLLELFWNNHDPTTPNRQGWDVGEQYSSHIFYFTEEQKLLAEKSFEKIQKNSELKIVTA-IRKASDFFPAEEYHQKYFMKKNNCILN 156          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_METTH (Peptide methionine sulfoxide reductase msrA OS=Methanobacterium thermoautotrophicum GN=msrA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.150e-25
Identity = 63/148 (42.57%), Postives = 85/148 (57.43%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKER-EQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            A F  G FW  E  F  ++GVV T VGY GG   NP + +    L  HAE V+V +DP V+ +  LL+VFW+ HD   +  QGPDVG QYRS+IF +  E+ R A  S+ R E+       + T I+    FY AE  HQ++ L++NP
Sbjct:   10 ATFGAGCFWGVEDAFRKVDGVVSTRVGYMGGHLENPTYEDVCTGLTGHAEVVEVTFDPDVVGYSDLLDVFWSIHDPTTLNRQGPDVGEQYRSVIFYHSDEQRRAAIESRRRLEESGRFRDRIVTAIEPAGTFYEAEEYHQQY-LEKNP 156          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECOL5 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 65/155 (41.94%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D   QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHSTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SHIDS (Peptide methionine sulfoxide reductase msrA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=msrA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.049e-24
Identity = 64/155 (41.29%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L  V  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL++FW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPSVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQIFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_RHOCS (Peptide methionine sulfoxide reductase msrA OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=msrA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 63/151 (41.72%), Postives = 86/151 (56.95%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKS---SIVTTQIQQLVAFYPAEPEHQKFELKR 590
            L+ AVF +G FW  E  F  + GV  T  GYAGG   NP +  +      HAE V V YDP  +++ +LL+VFW +HD  Q   QG DVG QYRS I+    E+ RLA  S++    + K+     VTT+I++  AFY AE  HQ++  K+
Sbjct:   46 LETAVFGMGCFWGVERKFWQVPGVYSTAAGYAGGPTPNPTYEEVCTGRTGHAEVVLVVYDPATVSYAELLKVFWENHDPTQGMRQGNDVGTQYRSAIYATTPEQLRLAEASRDSYASRLKAQGYGAVTTEIREAPAFYYAEDYHQQYLHKK 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_YERPY (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=msrA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +HQ++ L +NP
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQY-LHKNP 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_YERPS (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis GN=msrA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +HQ++ L +NP
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQY-LHKNP 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_YERPP (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis (strain Pestoides F) GN=msrA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +HQ++ L +NP
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQY-LHKNP 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_YERPN (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=msrA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +HQ++ L +NP
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQY-LHKNP 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_YERPG (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=msrA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +HQ++ L +NP
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQY-LHKNP 195          
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_METM64.709e-2540.52Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_METTH6.150e-2542.57Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_ECOL58.032e-2541.94Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_SHIDS1.049e-2441.29Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_RHOCS1.370e-2441.72Peptide methionine sulfoxide reductase msrA OS=Rho... [more]
MSRA_YERPY1.789e-2440.40Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPS1.789e-2440.40Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPP1.789e-2440.40Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPN1.789e-2440.40Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPG1.789e-2440.40Peptide methionine sulfoxide reductase msrA OS=Yer... [more]

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Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
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