FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_YERPE (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis GN=msrA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +HQ++ L +NP
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQY-LHKNP 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_YERPB (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=msrA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +HQ++ L +NP
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQY-LHKNP 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_YERPA (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=msrA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +HQ++ L +NP
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQY-LHKNP 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_YERP3 (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=msrA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +HQ++ L +NP
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQY-LHKNP 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECOL6 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O6 GN=msrA PE=3 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 65/155 (41.94%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T   Y GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAVYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_METM5 (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=msrA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 59/153 (38.56%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  162 KAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEF----RNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIH 608
            + AVF +G FWS+E +F  + GV+ T VG+ GG+  NP +    R    H E V + Y+P+++ +  LL +FW +HD      QG DVG QY S IF   TEE RL A     +  KS    + T I++   F+PAE  HQK+ +K+N  +++
Sbjct:    5 ETAVFGMGCFWSAEELFRKIKGVISTEVGFMGGTVKNPTYGQVCRGKSGHIEVVNITYNPKIVKYTDLLNLFWNNHDPTTPNRQGWDVGEQYSSHIF-YFTEEQRLLAEKSFEKIQKSSDLRIVTAIKKASDFFPAEEYHQKYFMKKNNSILN 156          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALAI (Peptide methionine sulfoxide reductase msrA OS=Salinispora arenicola (strain CNS-205) GN=msrA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 67/164 (40.85%), Postives = 90/164 (54.88%), Query Frame = 3
Query:  138 NDELGRPL--------KAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQM-----KSKSSIVTTQIQQLVAFYPAEPEHQKF 578
            ++ LG PL        + AVF +G FW +E +F  L GV+ T+VGYAGG   NP +  +      HAE VQV YDP  I +  LL+VFW +HD  Q   QG DVG QYRS I+T  T E +L A    R+       ++    +TT+I  L  +Y AE  HQ++
Sbjct:   30 HEVLGTPLAGPFPEGTQVAVFGMGCFWGAERLFWTLPGVLTTSVGYAGGYTPNPSYEEVCSGRTGHAEVVQVRYDPTKIAYEDLLKVFWENHDPTQGMRQGNDVGTQYRSAIYT--TTEEQLTAAQASRDAFAPVVARAGKGEITTEIGPLGDYYFAEDYHQQY 191          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_PHOPR (Peptide methionine sulfoxide reductase msrA OS=Photobacterium profundum GN=msrA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 61/164 (37.20%), Postives = 90/164 (54.88%), Query Frame = 3
Query:  129 TSVNDELGRPLKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQ----MKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            T +NDE        +  +G FW +E +F  L G+  T VGY+GG   NP +  +      H+E V++ YDP +I+  Q+L +FW SH+  Q   QG D+G QYRS+I+T    +   A HSK+  Q     +   S +TT+I+    FY AE  HQ++ L +NP
Sbjct:   33 TILNDEKPSNYSEIIIGMGCFWGAERLFWNLPGIYSTAVGYSGGFTPNPTYEEVCSGKTGHSEVVRIIYDPLIISLEQILTLFWESHNPTQGMQQGNDIGTQYRSVIYTTTPNQLTYAQHSKQCYQQSLEQQQLESPITTEIEPAGTFYFAEDYHQQY-LVKNP 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_KLEP3 (Peptide methionine sulfoxide reductase msrA OS=Klebsiella pneumoniae (strain 342) GN=msrA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 64/154 (41.56%), Postives = 88/154 (57.14%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +      HAE+V+V YDP+VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E++  A  S  R Q     +     +TT+I     FY AE +HQ++ L +NP
Sbjct:   43 MEVALFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGQTGHAEAVRVVYDPQVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQTAAAKASLARFQAAMNDAHDTRHITTEIATAKPFYYAEDDHQQY-LYKNP 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_METM7 (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=msrA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 62/153 (40.52%), Postives = 89/153 (58.17%), Query Frame = 3
Query:  162 KAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEF----RNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIH 608
            + AVF +G FWS+E +F  ++GV+ T VGY GG+  NP +    R    H E V+V YD ++I +  LLE+FW +HD      QG DVG QY S IF    E+  +A  S E+ Q      IVT  I++   F+PAE  HQK+ +K+N  +++
Sbjct:    5 ETAVFGMGCFWSAEELFRHVDGVISTEVGYMGGNVKNPTYGQVCRGKSGHIEVVKVSYDSKIITYDDLLELFWKNHDPTTPNRQGWDVGEQYSSHIFYFTDEQRIVAEKSLEKMQCYMDLKIVTA-IKKASDFFPAEEYHQKYFMKKNNCILN 156          
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_YERPE1.789e-2440.40Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPB1.789e-2440.40Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPA1.789e-2440.40Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERP31.789e-2440.40Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_ECOL61.789e-2441.94Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_METM52.337e-2438.56Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_SALAI5.206e-2440.85Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_PHOPR5.206e-2437.20Peptide methionine sulfoxide reductase msrA OS=Pho... [more]
MSRA_KLEP35.206e-2441.56Peptide methionine sulfoxide reductase msrA OS=Kle... [more]
MSRA_METM76.799e-2440.52Peptide methionine sulfoxide reductase msrA OS=Met... [more]

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Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
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