FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ENT38 (Peptide methionine sulfoxide reductase msrA OS=Enterobacter sp. (strain 638) GN=msrA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 63/155 (40.65%), Postives = 87/155 (56.13%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +      HAE+V++ YDP V  + QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S  R Q   +++     VTT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIALFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGETGHAEAVRIVYDPSVTRYEQLLQVFWENHDPAQGMQQGNDHGTQYRSAIYPLTPEQDAAARASLARFQDAMQAAGDHRTVTTEIANATPFYYAEDDHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_HALWD (Peptide methionine sulfoxide reductase msrA OS=Haloquadratum walsbyi (strain DSM 16790) GN=msrA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 67/166 (40.36%), Postives = 86/166 (51.81%), Query Frame = 3
Query:  183 GSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIHLMGNLPQEELEKSNLASKLT 668
            G FW +EA    L GV   T GYAGG   NP ++ +     DHAE VQ+EYDP  I + +LLEVF+ +HD  Q+  QGPDVG QYRSII T+ T E R  A +            + T+I+ L  F+ AE  HQ +  K        M   P+ E  +     KLT
Sbjct:   10 GCFWCTEAAMKELAGVNTVTSGYAGGDIDNPTYKQVCSGTTDHAEVVQIEYDPTKIEYSELLEVFFATHDPTQLNRQGPDVGTQYRSIILTH-TAEQRATAEAYIEALNDHYDDAIVTEIESLERFWSAEEYHQDYFEKNPSDAYCRMHAQPKVEKVRETFTEKLT 174          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_GEOMG (Peptide methionine sulfoxide reductase msrA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=msrA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 61/149 (40.94%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK-SSIVTTQIQQLVAFYPAEPEHQKFELKR 590
            L+ A F  G FW  EA F  ++GVV T  GY GG K +P +  +      HAE V+V YDP  +++ +LL +FWT HD  Q+  QGPD+G  YRS+IF +  E+ + A  S E+E    + S  + T+I    AF+ AE  HQ++  KR
Sbjct:    7 LEKATFGAGCFWHVEAEFRRVSGVVATHAGYMGGWKDHPTYEEVCSKETGHAEVVEVVYDPARVSYDELLRIFWTIHDPTQLNRQGPDIGTNYRSVIFFHTPEQEQAARLSMEKEGGSGRYSRPIVTEIASASAFWWAEEYHQQYLEKR 155          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_METBU (Peptide methionine sulfoxide reductase msrA OS=Methanococcoides burtonii (strain DSM 6242) GN=msrA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.515e-23
Identity = 57/145 (39.31%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK-SSIVTTQIQQLVAFYPAEPEHQKF 578
            ++ A FA G FW  EA F  + GV+ T VGY GG+  +P ++++      HAES+ + +D  VI + +LLEV W +HD      QGPD G+QYRS IF +   +   A  S+E+ +   K  S + T+I +   F PAE  HQK+
Sbjct:    1 MERATFAAGCFWGVEAAFSKVEGVISTKVGYTGGTLKDPTYKDVSTGSTGHAESIDIIFDESVITYGELLEVLWNTHDPTTKDSQGPDHGSQYRSAIFYHDDAQREAALRSREQLERSGKYDSTIKTEIVKASEFSPAEDYHQKY 145          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_METMJ (Peptide methionine sulfoxide reductase msrA OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=msrA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 60/151 (39.74%), Postives = 81/151 (53.64%), Query Frame = 3
Query:  153 RPLKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK-SSIVTTQIQQLVAFYPAEPEHQKFELKR 590
            + L+ A F  G FW  E  F  + GVV T VG+ GG+  NP +  +      HAE VQV YDP  +++R LL+ FW +HD      QGPD+G QYRS+IF +  E+   A  SKE      K    + T I+    F+ AE  HQ++  KR
Sbjct:    5 KSLERATFGAGCFWGVEEAFRRVPGVVETAVGFMGGTVENPTYPEVCTGRTGHAEVVQVTYDPGTVSYRALLDTFWDAHDPTTPNRQGPDIGTQYRSVIFVHTPEQEAEARASKEEMDQSGKFRRPIVTAIEPAGTFWRAEEYHQQYFAKR 155          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_METCA (Peptide methionine sulfoxide reductase msrA OS=Methylococcus capsulatus GN=msrA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 63/144 (43.75%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSK---EREQMKSKSSIVTTQIQQLVAFYPAEPEHQKF 578
            A F +G FW +E  F  L GV  T VGYAGGS  NP +  +      HAE V V Y+P  + F  LL+VFWTSHD  Q   QG DVG QYRS+IF    E+ + A  S+   ER   ++    +TT+I+    FY AE  HQ++
Sbjct:   48 AFFGMGCFWGAERRFWTLPGVYSTAVGYAGGSTPNPTYDEVCTGRTGHAEVVLVVYEPDKVGFDALLQVFWTSHDPTQGMRQGNDVGTQYRSVIFATTPEQLQWALVSRDAYERALERAGRGGITTEIRMAPDFYYAESYHQQY 191          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_MOUSE (Peptide methionine sulfoxide reductase OS=Mus musculus GN=Msra PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 62/150 (41.33%), Postives = 82/150 (54.67%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQ---MKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            AVF +G FW +E  F  L GV  T VG+AGG   NP ++ +      HAE V+V Y P  I+F +LL+VFW +HD  Q   QG D G QYRS ++     +   A  SKE  Q    K     +TT I++   FY AE  HQ++ L +NP
Sbjct:   66 AVFGMGCFWGAERKFWVLKGVYSTQVGFAGGHTRNPTYKEVCSEKTGHAEVVRVVYRPEHISFEELLKVFWENHDPTQGMRQGNDFGTQYRSAVYPTSAVQMEAALRSKEEYQKVLSKHNFGPITTDIREGQVFYYAEDYHQQY-LSKNP 214          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_POLSQ (Peptide methionine sulfoxide reductase msrA OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 57/145 (39.31%), Postives = 85/145 (58.62%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAH-SKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKF 578
            L+ A    G FW  EAV+  + GV     GYAGG++ NP + ++      HAE V +E+DP+V++FR LLE+F+  H+   +  QG D G QYRS+I+T+  E++++A    +E E  K  +  V TQI+     YPAE  HQ +
Sbjct:   12 LERATLGGGCFWCLEAVYQQIQGVKSVVSGYAGGARPNPSYESVCTGATGHAEIVDIEFDPKVVSFRDLLEIFFVIHNPTTLNYQGNDHGTQYRSVIYTHSDEQAKIANEVVQELEDSKIYADPVVTQIESAPTIYPAEDYHQNY 156          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_FRASN (Peptide methionine sulfoxide reductase msrA OS=Frankia sp. (strain EAN1pec) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 63/165 (38.18%), Postives = 89/165 (53.94%), Query Frame = 3
Query:  114 PDR---VSTSVNDELGRPLKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS---IVTTQIQQLVAFYPAEPEHQKF 578
            PDR   +  S+       L+ AVF +G FW +E  F  + GV  T VGYAGG   NP +      L  H E+V V +DP  ++F +LL VFW +HD  Q   QG DVG QYRS ++T G +++  A  S++  Q    ++    +TT+I     FY AE  HQ++
Sbjct:   28 PDRHTVLGASLLGPFPEGLRTAVFGMGCFWGAERKFWQVPGVYSTAVGYAGGITPNPTYEEACSGLTGHTEAVLVVFDPAKVSFAELLRVFWEAHDPTQGMRQGNDVGTQYRSAVYTTGEDQAAAALASRDAFQRVLTAAGYPEITTEIAPAGPFYYAEEYHQQY 192          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_NAUPA (Peptide methionine sulfoxide reductase msrA OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23
Identity = 61/167 (36.53%), Postives = 95/167 (56.89%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELK--RNPFLIHLMGNLPQEELEKSN 650
            AVF  G FW  +AVF  ++GV    VGYAGG + NP +  +      HAE V+++YD   +++ +LL++F+  HD  Q+  QG DVG QYRSII     E+   A   K+ E++K +   V T+++ L  FYPAE  HQ +  K    P+ ++++    ++ L+  N
Sbjct:    4 AVFGGGCFWCLDAVFRKVDGVRDVVVGYAGGRRPNPNYEQVCTGVTGHAEVVEIDYDENTVSYDELLDIFFKIHDPTQLNRQGNDVGTQYRSIILYLDEEQKEKAL--KKIEELKKEGLNVVTEVKPLEIFYPAEKYHQNYFAKNPHQPYCMYVVAPKVEKYLKIKN 168          
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_ENT386.799e-2440.65Peptide methionine sulfoxide reductase msrA OS=Ent... [more]
MSRA_HALWD1.160e-2340.36Peptide methionine sulfoxide reductase msrA OS=Hal... [more]
MSRA_GEOMG1.160e-2340.94Peptide methionine sulfoxide reductase msrA OS=Geo... [more]
MSRA_METBU1.515e-2339.31Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_METMJ1.978e-2339.74Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_METCA1.978e-2343.75Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_MOUSE2.584e-2341.33Peptide methionine sulfoxide reductase OS=Mus musc... [more]
MSRA_POLSQ3.375e-2339.31Peptide methionine sulfoxide reductase msrA OS=Pol... [more]
MSRA_FRASN3.375e-2338.18Peptide methionine sulfoxide reductase msrA OS=Fra... [more]
MSRA_NAUPA4.407e-2336.53Peptide methionine sulfoxide reductase msrA OS=Nau... [more]

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Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
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