FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_YERE8 (Peptide methionine sulfoxide reductase msrA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=msrA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.756e-23
Identity = 59/154 (38.31%), Postives = 87/154 (56.49%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQM----KSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++ A+FA+G FW  E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP +I+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+   Q        S  +T++I   + FY AE +HQ++ L +NP
Sbjct:   43 MEVAIFAMGCFWGVERLFWQQPGVYSTAAGYSGGYTPNPTYHEVCSGRTAHAEVVRVVFDPAIISYKQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQETQAQESQALFQQAMTKAGDSRAITSEIAAALPFYYAEDDHQQY-LYKNP 195          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_VIBPA (Peptide methionine sulfoxide reductase msrA OS=Vibrio parahaemolyticus GN=msrA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.756e-23
Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  129 TSVNDELGRPLKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKS---SIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +S+   L    +  +  +G FW +E +F  L+GVV T+VGYAGG   NP +  +      H E V+V +D RVI+  QLL VFW  HD  Q   QG D+G QYRS I+T   ++  +A  SK + Q   ++   S +TT+I     +Y AE  HQ++ L +NP
Sbjct:   32 SSLTAPLAHHQQQILLGMGCFWGAERLFWQLDGVVSTSVGYAGGFTPNPTYEEVCTGKTGHTEVVRVVFDERVISLAQLLAVFWEKHDPTQGMRQGNDLGTQYRSAIYTYSQDQQEIADKSKLQYQQALEAELRSTITTEIVPAGPYYFAETYHQQY-LAKNP 193          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_LEPBJ (Peptide methionine sulfoxide reductase msrA OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=msrA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 58/150 (38.67%), Postives = 86/150 (57.33%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            ++ A    G FW  EAV+  + G+     GYA G   NP++R++      HAE+VQ+ +D +VI++ ++LE+FW SHD   +  QG DVG QYRSII  +  E+ + A  S ++        IV TQ++ L  FYPAE  HQ +  + NP
Sbjct:    1 MEQATLGGGCFWCLEAVYQMVEGIESVVSGYAAGQTKNPDYRSVCSGTTGHAETVQITFDSKVISYFEILEIFWISHDPTTLNRQGNDVGTQYRSIILYHSPEQKKQAEQSIQKAGEHFSDPIV-TQVEILKEFYPAEDYHQNY-FRTNP 148          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA2_SYNY3 (Peptide methionine sulfoxide reductase msrA 2 OS=Synechocystis sp. (strain PCC 6803) GN=msrA2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 64/178 (35.96%), Postives = 102/178 (57.30%), Query Frame = 3
Query:  153 RPLKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHAESVQVEYDPRVINFRQLLEVFWT-SHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLA-AHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIH-LMGNLPQEELEKSNLASKL 665
            R  + AVFA G FW  EA+F  + GV     GY+GG++    +  +     DHAES+++ YDP  +++ +LL++F++  HD  QV  QG D G QYRS IF    E+ ++A A+  + E+ ++    + T++    AFYPAE  HQ F ++RNP   + L+ +LP+    +   + KL
Sbjct:   34 RGTEKAVFAGGCFWGLEAMFEEVRGVKDVQTGYSGGTEATANYARVSGGGTDHAESIEIVYDPAQVSYGELLKIFFSVGHDPTQVNRQGVDQGRQYRSAIFATTPEQKQVAQAYIDQLEESQAFDQAIATEVNDFDAFYPAEDYHQDF-VQRNPAHPYVLVHDLPKLRKFRQQYSDKL 210          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALTO (Peptide methionine sulfoxide reductase msrA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=msrA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.818e-23
Identity = 64/165 (38.79%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  129 TSVNDELGRPLKA--------AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKER---EQMKSKSSIVTTQIQQLVAFYPAEPEHQKF 578
            T  ++ LG PL          AVF +G FW +E +F  L GV+ T+VGYAGG   NP +  +      HAE V V YDP  I +  LL+VFW +HD  Q   QG DVG QYRS I+    E+   A  S++       ++    +TT+I  L  +Y AE  HQ++
Sbjct:   27 TEPHEVLGTPLTGPFPEGTAVAVFGMGCFWGAERLFWTLPGVLTTSVGYAGGYTPNPSYDEVCSGRTGHAEVVHVRYDPTKITYEDLLKVFWENHDPTQGMRQGNDVGTQYRSAIYPTTDEQLTTARASRDAFAPVVARAGKGEITTEISPLGDYYLAEGYHQQY 191          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_RAT (Peptide methionine sulfoxide reductase OS=Rattus norvegicus GN=Msra PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.818e-23
Identity = 61/150 (40.67%), Postives = 82/150 (54.67%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQ---MKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            AVF +G FW +E  F  L GV  T VG+AGG   NP ++ +      HAE V+V Y P  ++F +LL+VFW +HD  Q   QG D G QYRS ++     +   A  SKE  Q    K     +TT I++   FY AE  HQ++ L +NP
Sbjct:   66 AVFGMGCFWGAERKFWLLKGVYSTQVGFAGGYTRNPTYKEVCSEKTGHAEVVRVVYRPEHVSFEELLKVFWENHDPTQGMRQGNDCGTQYRSAVYPTSAVQMEAALKSKEEYQKVLSKHGFGPITTDIREGQVFYYAEDYHQQY-LSKNP 214          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_HUMAN (Peptide methionine sulfoxide reductase OS=Homo sapiens GN=MSRA PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.818e-23
Identity = 61/150 (40.67%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQ---MKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            AVF +G FW +E  F  L GV  T VG+AGG  +NP ++ +      HAE V+V Y P  ++F +LL+VFW +HD  Q   QG D G QYRS I+    ++   A  SKE  Q    +     +TT I++   FY AE  HQ++ L +NP
Sbjct:   68 AVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQY-LSKNP 216          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_BRUMB (Peptide methionine sulfoxide reductase msrA OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=msrA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.818e-23
Identity = 61/153 (39.87%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKS---SIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +K  +F +G FW +E +F  + GV  T VGYAGG   NP +      L  HAE V V YDP+V+   +LL +FW  HD  Q   QG D+G  YRS+I+T    +  +A  S++       S     VTTQI +   FY AE  HQ++ L +NP
Sbjct:   48 MKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQITEAPDFYYAEDYHQQY-LAKNP 199          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_BRUSU (Peptide methionine sulfoxide reductase msrA OS=Brucella suis GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 61/153 (39.87%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKS---SIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +K  +F +G FW +E +F  + GV  T VGYAGG   NP +      L  HAE V V YDP+V+   +LL +FW  HD  Q   QG D+G  YRS+I+T    +  +A  S++       S     VTTQI     FY AE  HQ++ L +NP
Sbjct:   48 MKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQY-LAKNP 199          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_BRUSI (Peptide methionine sulfoxide reductase msrA OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 61/153 (39.87%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKS---SIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +K  +F +G FW +E +F  + GV  T VGYAGG   NP +      L  HAE V V YDP+V+   +LL +FW  HD  Q   QG D+G  YRS+I+T    +  +A  S++       S     VTTQI     FY AE  HQ++ L +NP
Sbjct:   48 MKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQY-LAKNP 199          
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_YERE85.756e-2338.31Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_VIBPA5.756e-2338.65Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_LEPBJ7.518e-2338.67Peptide methionine sulfoxide reductase msrA OS=Lep... [more]
MSRA2_SYNY37.518e-2335.96Peptide methionine sulfoxide reductase msrA 2 OS=S... [more]
MSRA_SALTO9.818e-2338.79Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_RAT9.818e-2340.67Peptide methionine sulfoxide reductase OS=Rattus n... [more]
MSRA_HUMAN9.818e-2340.67Peptide methionine sulfoxide reductase OS=Homo sap... [more]
MSRA_BRUMB9.818e-2339.87Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUSU1.675e-2239.87Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUSI1.675e-2239.87Peptide methionine sulfoxide reductase msrA OS=Bru... [more]

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Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
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