FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_BRUO2 (Peptide methionine sulfoxide reductase msrA OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 61/153 (39.87%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKS---SIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +K  +F +G FW +E +F  + GV  T VGYAGG   NP +      L  HAE V V YDP+V+   +LL +FW  HD  Q   QG D+G  YRS+I+T    +  +A  S++       S     VTTQI     FY AE  HQ++ L +NP
Sbjct:   48 MKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQY-LAKNP 199          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_BRUME (Peptide methionine sulfoxide reductase msrA OS=Brucella melitensis GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 61/153 (39.87%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKS---SIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +K  +F +G FW +E +F  + GV  T VGYAGG   NP +      L  HAE V V YDP+V+   +LL +FW  HD  Q   QG D+G  YRS+I+T    +  +A  S++       S     VTTQI     FY AE  HQ++ L +NP
Sbjct:   48 MKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQITDAPDFYYAEDYHQQY-LAKNP 199          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_BRUC2 (Peptide methionine sulfoxide reductase msrA OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 61/153 (39.87%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKS---SIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +K  +F +G FW +E +F  + GV  T VGYAGG   NP +      L  HAE V V YDP+V+   +LL +FW  HD  Q   QG D+G  YRS+I+T    +  +A  S++       S     VTTQI     FY AE  HQ++ L +NP
Sbjct:   48 MKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQY-LAKNP 199          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_BRUAB (Peptide methionine sulfoxide reductase msrA OS=Brucella abortus GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 61/153 (39.87%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKS---SIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +K  +F +G FW +E +F  + GV  T VGYAGG   NP +      L  HAE V V YDP+V+   +LL +FW  HD  Q   QG D+G  YRS+I+T    +  +A  S++       S     VTTQI     FY AE  HQ++ L +NP
Sbjct:   48 MKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQY-LAKNP 199          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_BRUA2 (Peptide methionine sulfoxide reductase msrA OS=Brucella abortus (strain 2308) GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 61/153 (39.87%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKS---SIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +K  +F +G FW +E +F  + GV  T VGYAGG   NP +      L  HAE V V YDP+V+   +LL +FW  HD  Q   QG D+G  YRS+I+T    +  +A  S++       S     VTTQI     FY AE  HQ++ L +NP
Sbjct:   48 MKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQY-LAKNP 199          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_BRUA1 (Peptide methionine sulfoxide reductase msrA OS=Brucella abortus (strain S19) GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 61/153 (39.87%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKS---SIVTTQIQQLVAFYPAEPEHQKFELKRNP 596
            +K  +F +G FW +E +F  + GV  T VGYAGG   NP +      L  HAE V V YDP+V+   +LL +FW  HD  Q   QG D+G  YRS+I+T    +  +A  S++       S     VTTQI     FY AE  HQ++ L +NP
Sbjct:   48 MKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQY-LAKNP 199          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_NATPD (Peptide methionine sulfoxide reductase msrA OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=msrA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 64/174 (36.78%), Postives = 93/174 (53.45%), Query Frame = 3
Query:  183 GSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLA-AHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIHLMGNLPQEELEKSNLASKLTVMQQSFA 689
            G FW  EA F  L+GV   T GYAGG   +P +R +      HAE VQV YD  V+ +  LLEVF+T HD  Q+  QGPDVG+QYRSI+  +   +  LA A+ +  ++       + T+I++L  FY AE  HQ +  K            PQ+   + +   K+  ++++FA
Sbjct:   10 GCFWCVEAAFEELDGVESVTSGYAGGHTEDPTYREVCSGNTGHAEVVQVAYDSDVLAYEDLLEVFFTVHDPTQLNRQGPDVGSQYRSIVLYHDDTQRELAEAYIESLDEAGEYDDDIVTEIERLETFYRAEENHQNYFEKN-----------PQDAYCRMHAQPKIETVREAFA 172          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 59/141 (41.84%), Postives = 81/141 (57.45%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFR----NLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKF 578
            A FA G FW SE  F  + GV++T VGY+ G   +P +R       +H+E V+V++DP+V  +  LL VFW+ HD   +  QG DVG QYRS I+    E+  LA  SKE +Q + K   V T+I     FY AE  HQ++
Sbjct:   26 AQFASGCFWGSELRFQRVVGVIKTEVGYSQGHVHDPNYRLVCSGTTNHSEVVRVQFDPQVCPYSDLLSVFWSRHDPTTLNRQGGDVGTQYRSGIYYYNEEQDCLAKKSKEAKQKEFKDKRVVTEILPAKRFYRAEEYHQQY 166          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRAB_TREPA (Peptide methionine sulfoxide reductase msrB/msrA OS=Treponema pallidum GN=msrAB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 61/163 (37.42%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIF-TNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIHLMGNLPQEELE 641
            A+FA G FWS+EA F  + GV+R  VGY GG+  +P +RN+      HAE+V++ +DP+VI++  LL+ F+  HD   +  QG DVG QYRS IF  +GT++ +              +  + T +++   FYPAE  HQ +  K      H+  +L  E LE
Sbjct:  129 ALFAAGCFWSTEAYFRRVKGVLRVRVGYTGGTTKSPTYRNVCTGTTGHAEAVEILFDPQVISYEDLLKHFFRMHDPTSLNKQGGDVGTQYRSAIFYLSGTQKQQAETLMGRYAGAGKFTRPLVTTLEEARDFYPAEEYHQDYLTKNPGGYCHVSLHLASEPLE 291          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_STRGG (Peptide methionine sulfoxide reductase msrA OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=msrA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22
Identity = 63/155 (40.65%), Postives = 87/155 (56.13%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQ---MKSKSSIVTTQIQQLVA--FYPAEPEHQKFELKRNP 596
            L+ A FALG FW +E  F    GV  T VGY GG   NP +      L  H E+V+V +DP V+++ +LL++FW SH+  Q F QG DVG QYRS I+T+   ++  A  S+   Q     S    +TT+I       F+PAE  HQ++ L +NP
Sbjct:   46 LEVADFALGCFWGAERKFWQTEGVWTTLVGYQGGYTENPSYEEACSGLTGHTEAVRVVFDPAVVSYEELLKLFWESHNPTQGFRQGNDVGTQYRSAIYTHSPAQAAAADASRAAYQKVLTASGHQEITTEILPAEGRPFWPAEAYHQQY-LDKNP 199          
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_BRUO21.675e-2239.87Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUME1.675e-2239.87Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUC21.675e-2239.87Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUAB1.675e-2239.87Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUA21.675e-2239.87Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUA11.675e-2239.87Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_NATPD2.187e-2236.78Peptide methionine sulfoxide reductase msrA OS=Nat... [more]
MSRA_FRAAN2.187e-2241.84Peptide methionine sulfoxide reductase OS=Fragaria... [more]
MSRAB_TREPA2.187e-2237.42Peptide methionine sulfoxide reductase msrB/msrA O... [more]
MSRA_STRGG3.731e-2240.65Peptide methionine sulfoxide reductase msrA OS=Str... [more]

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Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
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