FC921303

Overview
NameFC921303
Unique NameFC921303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 3.034e-63
Identity = 105/134 (78.36%), Postives = 121/134 (90.30%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NLDI+  ++KIIAEYIW+GG+G+DMRSK++T+  PV  PS+LPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKRH AAEIF+N  V AEVPW+GIEQEYTLLQ+
Sbjct:    4 LADLVNLDISDNSEKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAEIFANPDVIAEVPWYGIEQEYTLLQK 137          

HSP 2 Score: 34.6538 bits (78), Expect = 3.034e-63
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +V WPLGWP+G +PG
Sbjct:  134 LLQKDVNWPLGWPIGGFPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 3.956e-63
Identity = 104/134 (77.61%), Postives = 121/134 (90.30%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NLD++  T+KIIAEYIWIGG+G+D+RSK++T+  PV  PS+LPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKRH AA+IFS+  V AEVPW+GIEQEYTLLQ+
Sbjct:    4 LSDLINLDLSETTEKIIAEYIWIGGSGLDLRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYTLLQK 137          

HSP 2 Score: 34.6538 bits (78), Expect = 3.956e-63
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   ++ WPLGWPVG +PG
Sbjct:  134 LLQKDINWPLGWPVGGFPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 5.158e-63
Identity = 103/133 (77.44%), Postives = 120/133 (90.23%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQ 683
            L DL+NL+++  T+KIIAEYIWIGG+G+D+RSK++T+S PV  P +LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CDTYTPAGEPIPTNKRH AA+IFS+ +V AE  W+GIEQEYTLLQ
Sbjct:    4 LSDLINLNLSDVTEKIIAEYIWIGGSGMDLRSKARTLSGPVSDPHKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRHNAAKIFSHPEVLAEETWYGIEQEYTLLQ 136          

HSP 2 Score: 38.1206 bits (87), Expect = 5.158e-63
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +VKWP+GWPVG YPG
Sbjct:  134 LLQNSVKWPIGWPVGGYPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.725e-63
Identity = 103/134 (76.87%), Postives = 122/134 (91.04%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  T+K+IAEYIWIGG+G+D+RSK++T+  PV++PSELPKWNYDGSSTGQAPG+DSEVI+YPQAIFKDPFR GNNILVICD YTPAGEPIPTNKRH AA+IFSN  V AE PW+GIEQEYTLLQ+
Sbjct:    4 LSDLINLNLSDTTEKVIAEYIWIGGSGLDLRSKARTLPGPVKNPSELPKWNYDGSSTGQAPGQDSEVIIYPQAIFKDPFRRGNNILVICDAYTPAGEPIPTNKRHNAAKIFSNPDVVAEEPWYGIEQEYTLLQK 137          

HSP 2 Score: 33.4982 bits (75), Expect = 6.725e-63
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L    V WP+GWPVG +PG
Sbjct:  134 LLQKEVNWPVGWPVGGFPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 1.491e-62
Identity = 101/134 (75.37%), Postives = 121/134 (90.30%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NLD++  TDKIIAEYIW+GG+GID+RSK++T+  P+  PS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CD YTP GEPIP+NKR++AA +FS+  V+AEVPW+GIEQEYTLLQ+
Sbjct:    4 LTDLVNLDLSDCTDKIIAEYIWVGGSGIDLRSKARTVKGPITDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPQGEPIPSNKRYKAATVFSHPDVAAEVPWYGIEQEYTLLQK 137          

HSP 2 Score: 35.4242 bits (80), Expect = 1.491e-62
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   ++ WPLGWPVG YPG
Sbjct:  134 LLQKDLSWPLGWPVGGYPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.491e-62
Identity = 104/134 (77.61%), Postives = 121/134 (90.30%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  TDKIIAEYIWIGG+G+DMRSK++T+  PV  PS+LPKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFR G+NILVICD YTPAGEPIPTNKRH AA++FS+  V AEVPW+GIEQEYTLLQ+
Sbjct:    4 LSDLINLNLSETTDKIIAEYIWIGGSGLDMRSKARTLPGPVSDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRRGSNILVICDAYTPAGEPIPTNKRHAAAKVFSHPDVVAEVPWYGIEQEYTLLQK 137          

HSP 2 Score: 33.113 bits (74), Expect = 1.491e-62
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L    V WP+GWP+G +PG
Sbjct:  134 LLQKEVNWPVGWPIGGFPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.491e-62
Identity = 104/134 (77.61%), Postives = 121/134 (90.30%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  T+KIIAEYIWIGG+G+D+RSK++T+S PV  P++LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKRH AA+IFSN  V AE PW+GIEQEYTLLQ+
Sbjct:    4 LSDLINLNLSDSTEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSNPDVVAEEPWYGIEQEYTLLQR 137          

HSP 2 Score: 34.2686 bits (77), Expect = 1.491e-62
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   ++ WPLGWP+G +PG
Sbjct:  134 LLQRDINWPLGWPIGGFPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.944e-62
Identity = 103/134 (76.87%), Postives = 123/134 (91.79%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  T+KIIAEYIWIGG+G+D+RSK++T+S PV  PS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKRH AA+IFS+ +V++E PW+GIEQEYTLLQ+
Sbjct:    4 LTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQK 137          

HSP 2 Score: 34.6538 bits (78), Expect = 1.944e-62
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   ++ WPLGWPVG +PG
Sbjct:  134 LLQKDINWPLGWPVGGFPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.535e-62
Identity = 101/134 (75.37%), Postives = 122/134 (91.04%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  T+K+I EYIW+GG+G+D+RSK++T+S PV  P++LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CDTYTPAGEPIPTNKR  AA+IFS+  V+AEVPW+GIEQEYTLLQ+
Sbjct:    4 LSDLINLNLSETTEKVIVEYIWVGGSGMDLRSKARTLSGPVSDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRCNAAKIFSHPDVAAEVPWYGIEQEYTLLQK 137          

HSP 2 Score: 35.8094 bits (81), Expect = 2.535e-62
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L    VKWP+GWPVG +PG
Sbjct:  134 LLQKEVKWPIGWPVGGFPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.305e-62
Identity = 101/134 (75.37%), Postives = 120/134 (89.55%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NLD++  TD+IIAEYIWIGGTGID+RSK++T+  P+  P +LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GN+ILV+CD YTP GEPIPTNKR+ AA++FS+  V+AEVPW+GIEQEYTLLQ+
Sbjct:    4 LTDLVNLDLSDCTDRIIAEYIWIGGTGIDLRSKARTVKGPITDPIQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNHILVMCDCYTPQGEPIPTNKRYSAAKVFSHPDVAAEVPWYGIEQEYTLLQK 137          

HSP 2 Score: 36.5798 bits (83), Expect = 3.305e-62
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +V WPLGWPVG YPG
Sbjct:  134 LLQKDVSWPLGWPVGGYPG 152          
The following BLAST results are available for this feature:
BLAST of FC921303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLN12_ARATH3.034e-6378.36Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA1_MEDSA3.956e-6377.61Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA2_VITVI5.158e-6377.44Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA1_PHAVU6.725e-6376.87Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]
GLNA5_MAIZE1.491e-6275.37Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLNA1_LOTJA1.491e-6277.61Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA_NICPL1.491e-6277.61Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLN11_ORYSJ1.944e-6276.87Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA1_VITVI2.535e-6275.37Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA1_MAIZE3.305e-6275.37Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32103D09EF RVDevelopN Citrus clementina cDNA clone C32103D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921303 ID=FC921303; Name=FC921303; organism=Citrus clementina; type=EST; length=731bp
GGGAGTCTTCTCTTCTTTCTTTCTAATCGGACCCTGCAGCAGATCAGCAT
TTTGGTTTTACTCTTCAACCAATTTTCAGGGAGGAGTAGGTGAAAATGGC
GCAGATTTTGGCACCTTCTATGCAATGGCAGATGAGGATGCCTAAGTACT
CAAACATTGCAAGTCCTATGACAACAAAGATGTGGAGTTCTCTGTTGATG
AAGCAGAACAAGAAAGGAACAAATAGGAGTTCTGCCAAGTTTAGAGTGCT
TGCTTTGAAATCTGAAGACAGCACTGTCAATAGGCTAGAGGATCTACTCA
ATTTGGACATCACTCCATATACTGACAAAATCATTGCCGAATATATTTGG
ATTGGAGGTACTGGGATTGATATGCGTAGCAAGTCAAAGACCATTTCAAA
GCCTGTTGAGCATCCATCTGAGCTTCCCAAGTGGAATTATGATGGATCAA
GTACTGGACAGGCACCTGGTGAAGATAGTGAAGTAATTTTATACCCTCAA
GCAATTTTTAAGGACCCCTTCCGTGGAGGAAACAACATCTTGGTAATTTG
TGATACCTACACACCAGCAGGCGAGCCCATCCCTACAAACAAACGCCATA
GGGCTGCTGAAATTTTCAGTAACTCGAAAGTGTCTGCTGAAGTTCCATGG
TTTGGGATAGAGCAAGAGTACACCTTACTTCAACAAATGTGAAATGGCCT
CTGGGTTGGCCTGTTGGAGCCTATCCTGGTC
back to top